RNA id: TU47030


Basic Information

Item Value
RNA id TU47030
length 1327
lncRNA type sense_over
GC content 0.39
exon number 1
gene id LOC103026268
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6366684 ~ 6513701 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACTCTATTCCTCTTTATTGTTCTtgattgtgttattttttttaatgaaagaaCTGATATGTTTTGTTGATTGTTTTGCTTTGAGAGGTTGAGAGGATCCCTGCACTGTACTGTGACCTGTTCTCTGTGAACTGGGTCATAAGGAGTTGTTATACTGCAAAGTTTGGGGCCGAACAGTCCGCATAGCTTTTGGGAATCTAATGAGGAACAGGCTGTTTCCACTTGcttatatctttttttgttctccACACTTCTATTGCTTTTTTCATCGAGCCTCGTCTCAGATTTCATTTGCGTTTTATGTCGTCCTCAGTGTGGATTATGAGTAGAACAAAGGTATGAAAAGCTCTTATGGTAGTCAATACATGTAAGAAAGTCAATAGGTCACTGTATAGCCAGGTCCATACAGTACGTGTGCTAACAGATCAAAATCTGGCTtcccaaatacaaaccaaagcACCTCGTTTAGGGTTTTGTTACAGATTGCAATAACTGAAATGAATGAAGTGACTGTAAATAGATTATAAGGCATGGGAGCCCTGCAATTATGTTGGATGATATAAATTAAGATCATTGACAATGTTCTAACTCATTGTGGTGCAGTTACCTTTTCATTTTGCTTTAAAAAGGCTGAAACAGGTTGAGGTTTTAGCGATGTTTCTGCAGTGTGTTTTGTGGTGTTGCTGCCCGCGGTGGGGGTGGTGTTGGTAACAGCGGTGCCGTGgtgaggatggatgatgcagcACATTAACAGGCACTTCAGGCACTTAAAGGCTTCTGAAGTCATGTGATCATGAAGGACAATCAGAACCTGCGTGAGAGGGTGGTTTAAAACGGATCAAATCTTAATGTTGCCTCTCGTcacttttttattcatgctttgccaaaaattagtttttttatttttatcctcctgtctatctgtctgtctgtcatacATTTGTTTTTGCTCTGTTTTATTTGATATGCAAGCCTGTAAAGACTGTTCAGTGTAGATTTGTGGAGAAGGACAGAAATGCCTTTCAGTTCTTAAGAATGACTAACTTTTTAAACGACTTTGTCGCTGTTACACTGCAGAAGCAAAAGCTTTAAACAAAATCAGATGTGAAAATCATGTGAAGTCACTTTTTTGGGTCTATAAAAGAAGAGATGTTATTTTCATAAACACTGGATTCAATGCTGAATATTGTGACACTGGCATCAGCAATATGCCAGGATGTTGCTCAAGCCTCAGAAAAAAAGTGGATTCATTGTACATGCTGACTATGAGACCCactgggaattcattttttggGGCAGGGTTAATGTACTTTTTGACATTGTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47029 lncRNA downstream 6402 6359911 ~ 6360378 (-) True G34939
TU46866 lncRNA downstream 213919 6149230 ~ 6152861 (-) True G34829
TU46833 lncRNA downstream 314342 6049006 ~ 6052438 (-) False ablim1
TU46809 lncRNA downstream 323341 6042925 ~ 6043439 (-) True G34791
TU46774 lncRNA downstream 354111 5927689 ~ 6012669 (-) True G34769
TU47047 lncRNA upstream 175067 6543173 ~ 6546514 (-) False ndufaf8
TU47088 lncRNA upstream 307473 6675579 ~ 6679954 (-) True G34987
TU47089 lncRNA upstream 312245 6680351 ~ 6680909 (-) True G34988
TU47093 lncRNA upstream 320184 6688290 ~ 6689610 (-) False LOC103030829
TU47094 lncRNA upstream 320235 6688341 ~ 6689610 (-) False LOC103030829
XM_007259296.3 mRNA downstream 79147 6273871 ~ 6287633 (-) True LOC103025956
XM_007259294.2 mRNA downstream 95837 6268401 ~ 6270943 (-) True birc5
XM_007259293.3 mRNA downstream 100103 6256404 ~ 6266677 (-) True tmem235
XM_007259271.3 mRNA downstream 188679 6153694 ~ 6178101 (-) True pgs1
XM_015608363.2 mRNA upstream 175038 6543144 ~ 6546582 (-) True ndufaf8
XM_022669016.1 mRNA upstream 175038 6543144 ~ 6546559 (-) False ndufaf8
XM_022669018.1 mRNA upstream 185227 6553333 ~ 6558835 (-) False LOC103027554
XM_022669017.1 mRNA upstream 185227 6553333 ~ 6557903 (-) True LOC103027554
XM_007259305.3 mRNA upstream 199283 6567389 ~ 6578059 (-) True bicral
TU46775 other downstream 427380 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 438626 5907974 ~ 5928154 (-) False ccdc186
XR_002649848.1 other downstream 1004295 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 2483311 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 2577588 3783408 ~ 3789192 (-) False prr15l
TU47031 other upstream 97262 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 168915 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 251574 6619680 ~ 6653585 (-) True G34981
TU47717 other upstream 2556722 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 2836464 9204570 ~ 9205911 (-) True G35512

Expression Profile