RNA id: TU47031


Basic Information

Item Value
RNA id TU47031
length 2672
RNA type TUCP
GC content 0.42
exon number 4
gene id LOC103026268
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6366684 ~ 6513701 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctagtgtctgACACACCGATAATATACTATCAATTAATTATGTTCATGTTTGACTCCTGTTTTCCTGTAGCCAATTATCAGCAGGGCCGTTAGTGCTCCTGCACAGGTGAAGAAAGAGGGGAGCAGGGGAGACTGTTTGTTTCTCtagcatgctagctagctatgtaaCTACATTCATTGTTGAGGAGAGATAACAACAACTAGGAGGATACAAGAGaaataaatatgtgtaaataaataaataaatgggttCGTTTCTTCTGAAAGACATGAACAAGGAGGAAGAGGCCTTTTTACCTGATGGAGAGGTGCTTCCCCAAACTGAACAATCTCTTTATCAACCACATCTGAAggtgagACTTGAGAAGCCAAACTTGGGGAATTGAGATGAGTCAAGTCTGAAATCTAACCGACTGCAGTCTCATCAGCTGGTTTTCCATATGTTGCACTGAGAGGACACAATGATAGGACACAATAAAAGGGCAGCAGCACAATTCGAAACTATGAGCGGGCCGTGCTTTTCCGGCCGTCAGAGCAAAAGCCGCGCTGAATGCGAGAGCTAGGCGCAGCTCCTAACGGGATTATAGCAGCAGTTCGGCCTTCTGCCTGCCCTCCTTTGGATTTGGGATTTATCCGGCGCTGTTGTGGGATGGAAGGCCGGGATTTCGCTCCTCCGCCGCATGTGCTGGCTGAGCGCAGCCCGCTGCTGCACCGCGCCGCCGCACACACCGCCCCGCAGCACCCGGGCCACTTCCAGCCTGGAAAATACTATCCCCCTCACCTTCCGGTTCCTCCACACTCAGGTCTGTCAACCCTGCTGACGCTTCTGCTTCTGCCTTTACCTTTACCTCTGGTCTATACGGACGCACGGCGTGTGTGCGTTATTTATTGGAAAGCTAAATGTAGTCAGACACTGTGTGGAAAATGGGTTTAAcatacacacttcacaccacttTGAACAGCTCTTCTAGTATTTTTGAAACTGGATGTAGGATATatctgttttatatatgtttatatacgtgcttattttatattatttaataatttattttgtaataacGTATGTATTTATTGCGCTGGGACATTGCAGCTAGGAATGCCAAAAGTTCCAATTTAGTTTTTCCAAAATTCACTGTAGAACCCCACGAGCAGTGTGTTCACCAACAAACTGTCCTACATTTCAGAGCTGCCGTACTTTTTTGTGTTAAAGTTAAATGTCTTCTTTGTTTCGCCCTTTCTCCTATTACTATTCCTATTCCTGTGCTACACACACGCTCGCTCACTCACATACACTGGAGTGAACCCTTTGTTTCAGACCGCTTTGCTTATCGCAGCCGCGGCGCCTTCATAACGCAAGTttggaatgtgtgtgtttgagtaagaaaaagaaaaaggcacGGTGCATGTATATGTGTCCGCGTGCGTGCGAGTACGGTGGGCTATAGTTCATCGTAGAGTGTCCAAGATTAGGGTCAATcgtgagtgtgtgcgtgagtatatgtatgtgtgtgcttgATTTGGTAATAGATGCTTCTGTAATAGCAGAAAATtccgtgtgtgtgttagtgagagagagacagtgtgtgagtgttgagcGCGGCGTGTCTGGGTGTGAATGGCCTGCATTACATTTAACAAGTGGCTGTGGCTCAGAACTTCGTGCGCTTTTGGGACACGAGGGCATTTCagactctctcttttttatacaCACTGATAGGACACGAGTCCGCCGCGTGCGCGCATATGAAGACTATGGACACGAGTGTTAAATCACATTCATTATTAATCAGATGTAAATGCGCAGAGCAGTGCAGACACAGGccattatttttcttaaaagGAGGaaagctgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagatggcgCGTGTGTGTGCGGGCTTGTTAAATTTCCGCTAGTAGGTTTTAATCTGTCCTAACATTTCTGTAGGAATAACTTTTTTGTATATCAGTAACATGTTGTATGTTTAAACGTTTAAATGATCTCCAAAGTAGGCCTAATCATCTCCGTAAATTCTGATAGATATTTATTTGTGATGACAATGAGTGTGTTCAGAAAGAACAATAACGCTAAAAACTTTTAtgctttatttgttattatgtACAGCCGGCTTAAGGTATTTTAGAGCTgcgtttttattaatttaactttgtttcctttattctttttatGGTCTGTTTGTCGTGGTTATGGTCTGGCTGTACACGAGGATCTCAGTAATGTGGTGTTTCTGTGAGCAGCAGATTGTGAATATAAAATGTCTGAAGTATTTGTTGAAGCAGCTGTTTGTTTGACAGCAATTGCaattgctttttatattttgggATCAAACCGAACACATGACTTTGTTCTGTTTAACTTGAAAGGTGTCACATAATTATGCTAAATTAGGGTTGTGtagtaatgtattatttaagtgCAGAGTTTTAAATAACAAACATTATTAAAGCGGCTTTTGCTTGTTTTCAAGCATCTCTTTCTCGTTGTTTTTGTATATCTAAAAGTGAGCATACAAAATCATgaaacttttgttttattttgtttaaagtaGAGAAAGCACAGTTCTTCAGGTTACATGATGTGGCAAGTCAGTTTGGACCGAGCAAGTCGTATATGCACACTGTcatgtttagacattaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47030 lncRNA downstream 97262 6366780 ~ 6368106 (-) False LOC103026268
TU47029 lncRNA downstream 104990 6359911 ~ 6360378 (-) True G34939
TU46866 lncRNA downstream 312507 6149230 ~ 6152861 (-) True G34829
TU46833 lncRNA downstream 412930 6049006 ~ 6052438 (-) False ablim1
TU46809 lncRNA downstream 421929 6042925 ~ 6043439 (-) True G34791
TU47047 lncRNA upstream 29472 6543173 ~ 6546514 (-) False ndufaf8
TU47088 lncRNA upstream 161878 6675579 ~ 6679954 (-) True G34987
TU47089 lncRNA upstream 166650 6680351 ~ 6680909 (-) True G34988
TU47093 lncRNA upstream 174589 6688290 ~ 6689610 (-) False LOC103030829
TU47094 lncRNA upstream 174640 6688341 ~ 6689610 (-) False LOC103030829
XM_007259296.3 mRNA downstream 177735 6273871 ~ 6287633 (-) True LOC103025956
XM_007259294.2 mRNA downstream 194425 6268401 ~ 6270943 (-) True birc5
XM_007259293.3 mRNA downstream 198691 6256404 ~ 6266677 (-) True tmem235
XM_022669009.1 mRNA downstream 287267 6153694 ~ 6178101 (-) False pgs1
XM_007259271.3 mRNA downstream 287267 6153694 ~ 6178101 (-) True pgs1
XM_015608363.2 mRNA upstream 29443 6543144 ~ 6546582 (-) True ndufaf8
XM_022669016.1 mRNA upstream 29443 6543144 ~ 6546559 (-) False ndufaf8
XM_022669018.1 mRNA upstream 39632 6553333 ~ 6558835 (-) False LOC103027554
XM_022669017.1 mRNA upstream 39632 6553333 ~ 6557903 (-) True LOC103027554
XM_007259305.3 mRNA upstream 53688 6567389 ~ 6578059 (-) True bicral
TU46775 other downstream 525968 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 537214 5907974 ~ 5928154 (-) False ccdc186
XR_002649848.1 other downstream 1102883 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 2581899 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 2676176 3783408 ~ 3789192 (-) False prr15l
TU47043 other upstream 23320 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 105979 6619680 ~ 6653585 (-) True G34981
TU47717 other upstream 2411127 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 2690869 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 2912374 9426075 ~ 9431164 (-) False rpl38

Expression Profile