RNA id: TU47076


Basic Information

Item Value
RNA id TU47076
length 1150
RNA type TUCP
GC content 0.51
exon number 5
gene id G34981
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6619680 ~ 6653585 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATATTGGCATCCCGGTATGTGCCGTTGAGGATGGCCAGCTCCATCAGCTGCATTTTTTTCAAGCTGTCTTCACCTTCGGCTGCAGGGACCAGCAGCTtcttcacctcctccacagctcTCTTCAGTTTGATCTCAGCACGGTTCTGTGAGTCCTCCACTGTGATGAGAACATGCAGGTCCTCGTTCAGGTGCTCCCAGTTTGGCTTTCCTCGGTTCTGCTCCtcCTTTTTCTTGTCTCTCATGGAGCCCTTTCCTCGGACCATAATCTTGCAGCCTGTTTCAGCTTCCAGCTGTTTGGCAGTGAGCCCTCGGGGCCCAAGGATTCTCCCCACAAAGTTGAAGTCTGGATATTCTTTTACAGGCACGTAGAGTTTCTCCTGGAGCTGAGCGATAGGCCCCACAGCGTCTGGCAGCTCCGATGTCCTTTTGTCTGTACTGCCGTTCAGTGTGTCATTGTACATGTCCTTCCCCGCAGAAGTTGGGCAGGCTGCTCATCAGCTTCTTGTCGTTCATGAGCTGCATCAGATAGTCAGGAGTGGGCTTGGGCTTCTCCTTCGTTTCCATTTCCCCCACCATATTTAACCCTAGCTTTAAACACTGCAGCTTAAAAAACTCGTAAAGCAGGTGTTTAGTTAGTTAAGTTAGGTAGAtgtttagctagttaactaggttagttagttTTGAGAGGGAGGACGgctgcagctctctctctcttttctctttatttttctgtttcttcaCAGCAGTTCAGCAGCAGTCAAATTTAAACTGCTCCCCAGCAGCCCAGCGACCTCTTCTCTCCTTCTGCTTTCTTCACaaactctctctcctctttctttctctctttctctctctcctcacactgATTTAAACTAGCTACCAAACCCCCTCTGCTGTCCGGACTACAGGCGGATACTCCCAGATACAGCGCACACTCTCAGTAAATCTCTCAGTTCGTAGTTTCTTCGCTAAAGGTCAGAAAAACTCCCCGCACTGAGTGAACTCCCCTCCGGCATGCCCGCTCTGAGTCTGGGTCACTCCCGCTCCATTCGCCGCCccgtgctgctgctgcgctcCGGCTCCGCTGAGGCTCAGTGTGAGAGACGCGctgatacacagagagagagagagactgactgagtgactgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47047 lncRNA downstream 73166 6543173 ~ 6546514 (-) False ndufaf8
TU47030 lncRNA downstream 251574 6366780 ~ 6368106 (-) False LOC103026268
TU47029 lncRNA downstream 259302 6359911 ~ 6360378 (-) True G34939
TU46866 lncRNA downstream 466819 6149230 ~ 6152861 (-) True G34829
TU46833 lncRNA downstream 567242 6049006 ~ 6052438 (-) False ablim1
TU47088 lncRNA upstream 21994 6675579 ~ 6679954 (-) True G34987
TU47089 lncRNA upstream 26766 6680351 ~ 6680909 (-) True G34988
TU47093 lncRNA upstream 34705 6688290 ~ 6689610 (-) False LOC103030829
TU47094 lncRNA upstream 34756 6688341 ~ 6689610 (-) False LOC103030829
TU47099 lncRNA upstream 75276 6728861 ~ 6729154 (-) True G34997
XM_007259305.3 mRNA downstream 41621 6567389 ~ 6578059 (-) True bicral
XM_007259306.3 mRNA downstream 41921 6567389 ~ 6577759 (-) False bicral
XM_022669018.1 mRNA downstream 60845 6553333 ~ 6558835 (-) False LOC103027554
XM_022669017.1 mRNA downstream 61777 6553333 ~ 6557903 (-) True LOC103027554
XM_015608363.2 mRNA downstream 73098 6543144 ~ 6546582 (-) True ndufaf8
XM_007259313.3 mRNA upstream 34582 6688167 ~ 6696291 (-) True LOC103030829
XM_015608325.2 mRNA upstream 51483 6705068 ~ 6711220 (-) True LOC103045903
XM_007259315.3 mRNA upstream 57729 6711314 ~ 6715739 (-) True LOC103031455
XM_022669024.1 mRNA upstream 233124 6886709 ~ 6993101 (-) True LOC103032713
XM_022669023.1 mRNA upstream 233124 6886709 ~ 6992918 (-) False LOC103032713
TU47043 other downstream 78316 6537021 ~ 6541364 (-) True G34953
TU47031 other downstream 105979 6465368 ~ 6513701 (-) False LOC103026268
TU46775 other downstream 680280 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 691526 5907974 ~ 5928154 (-) False ccdc186
XR_002649848.1 other downstream 1257195 5257882 ~ 5362485 (-) False tcf7l2
TU47717 other upstream 2271243 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 2550985 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 2772490 9426075 ~ 9431164 (-) False rpl38
TU47867 other upstream 2773251 9426836 ~ 9431164 (-) False rpl38
TU47869 other upstream 2773251 9426836 ~ 9431228 (-) True rpl38

Expression Profile