RNA id: TU47093


Basic Information

Item Value
RNA id TU47093
length 1321
lncRNA type sense_over
GC content 0.43
exon number 1
gene id LOC103030829
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6688167 ~ 6696291 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTAAATATTCTGtgcctaaaacctttgcacaTTACTGTATACACAGAATACAGTGTACCATTATTTAACAGCAGTTTCATCAATTTAAAAATTTCACCgacacaaacaaaacagacacacaaaacaTGTTTAGACAAAAATTATAGCCACCATCATTACTCATGCAGTCTCTTAAATGCAAGAATTCATACCTTCATTCCTCCTGCTCACAGCTCACTGTATACAGCAAATGTCTGAAAAATAACAATAGTTGTATTTTATGTCCATTACAATAGTTTGCCTTGTATCTTTAAACCAAATTAATTACCAAAATCATTTTTGCTGGTAAAATCATGGAAAGAACAAAGACATTATaacacaaacaccatcatatGCTATCATAAACCAAATACTTACCTCTTGCTTACATTCAACTGCATGCTTTCAACagatttctgtattctgttCAGGGaaactacagttacagtagtgtagtaatttgcagtatactgtataaataacaTTCAAGGGTTATATTAAATTCAGTCAGTTAAGCTCTAATAGATGTTTGTTCTCAAGTAATttatgcttttgtattttttattatttggccAGTATTGTACTTAAATATTACTGTGGAAGTAAAACTGGCTTCCTTTTACAGTCCTGCTTGATTTTACACAATTGTAAAACTGAAAGCTTGCCAGCCAACAGGTGGGTTCTAGGTGGGCATGTGATCCGACTGGGGGATCTACATGTTTTGTTACTGGGATCCAGTTGGCTTCCCAAATGGTCACATTGTTTCAACCCATCTTATATCACATGGGTTCCATTTAGGCCCAGTGTGCCGTGTACAACCCAAATACACTCGTCCCATCACTGACATCCATATGTgggttaaataaaaattaaataaaagtatttcaatttaaattgattatttttataaGTAATAGAAAAGTCTAATCACAGATTCTGCTACATACCTATAACTTAAAGGACTGTAAAAGGAAGCATTAAATATAGAATCTATTGTGATTCTACATTTGACTGATGTAATCAGTTGAAAGTATACAGGTGAAAGGTCACTGAAGAGACTTACTGTGTttctgtgagtgaatgtgtatTATGCCAGTTCTGGTCAAATCTCCAGGCTGTTTTCACAGCTTTGTTCTTTTGCCAAAGCAAATTCATACTTTTTATTTGACCACATCATTGTGATTGACTGTCAATAGATACTAATAAACACATTACCGTAGAGGGCAGAAAGGTTTTGTTGTACAAtttctaataaaacatatattagtgTATTAAAATGCTTCACAATAGCTTTATGTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47089 lncRNA downstream 7381 6680351 ~ 6680909 (-) True G34988
TU47088 lncRNA downstream 8336 6675579 ~ 6679954 (-) True G34987
TU47047 lncRNA downstream 141776 6543173 ~ 6546514 (-) False ndufaf8
TU47030 lncRNA downstream 320184 6366780 ~ 6368106 (-) False LOC103026268
TU47029 lncRNA downstream 327912 6359911 ~ 6360378 (-) True G34939
TU47099 lncRNA upstream 39251 6728861 ~ 6729154 (-) True G34997
TU47100 lncRNA upstream 41332 6730942 ~ 6731499 (-) True G34998
TU47220 lncRNA upstream 271563 6961173 ~ 6961993 (-) True G35069
TU47229 lncRNA upstream 345120 7034730 ~ 7035818 (-) True G35077
TU47231 lncRNA upstream 346651 7036261 ~ 7040642 (-) True G35078
XM_007259305.3 mRNA downstream 110231 6567389 ~ 6578059 (-) True bicral
XM_007259306.3 mRNA downstream 110531 6567389 ~ 6577759 (-) False bicral
XM_022669018.1 mRNA downstream 129455 6553333 ~ 6558835 (-) False LOC103027554
XM_022669017.1 mRNA downstream 130387 6553333 ~ 6557903 (-) True LOC103027554
XM_015608363.2 mRNA downstream 141708 6543144 ~ 6546582 (-) True ndufaf8
XM_015608325.2 mRNA upstream 15458 6705068 ~ 6711220 (-) True LOC103045903
XM_007259315.3 mRNA upstream 21704 6711314 ~ 6715739 (-) True LOC103031455
XM_022669024.1 mRNA upstream 197099 6886709 ~ 6993101 (-) True LOC103032713
XM_022669023.1 mRNA upstream 197099 6886709 ~ 6992918 (-) False LOC103032713
XM_022669022.1 mRNA upstream 197099 6886709 ~ 6992918 (-) False LOC103032713
TU47076 other downstream 34705 6619680 ~ 6653585 (-) True G34981
TU47043 other downstream 146926 6537021 ~ 6541364 (-) True G34953
TU47031 other downstream 174589 6465368 ~ 6513701 (-) False LOC103026268
TU46775 other downstream 748890 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 760136 5907974 ~ 5928154 (-) False ccdc186
TU47717 other upstream 2235218 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 2514960 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 2736465 9426075 ~ 9431164 (-) False rpl38
TU47867 other upstream 2737226 9426836 ~ 9431164 (-) False rpl38
TU47869 other upstream 2737226 9426836 ~ 9431228 (-) True rpl38

Expression Profile