RNA id: TU47121


Basic Information

Item Value
RNA id TU47121
length 2430
lncRNA type sense_over
GC content 0.38
exon number 4
gene id G35012
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6809228 ~ 6942271 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaaaaaaaaatttaaaaaaaaaaaaaaaaaaaaaaaaaaagaagaagaattaatTTACAAATATGTAACTCTGACTCAGCCAGGCAAGGCAGTGATTTCCCCAAAGCGCAaaaagaataaagttgtaaagaaaaaaaataagcttaaaaCAGCATCACAGAGTCTGACAACTACACTAAAGAGGGCTTTGTGATGTGATgagctcacacacatacacacacgcattcACGCTCACACGTGCAGAGTTACAGTGCTGATATGTACCAAAGCCCTACACTCctataaaggattttttttttatttattttttttttttaaggggaaCAAATCCTATATTCAGGGGGTACAGAACACTTTACAGTACTTTACTTACAGTACTTTTATTTAGCTTATGTTTTATATccaaagttgttttattttgtagatGTTTACTCTATTGGTCACCTAAACTGGAAATTGAACAGGCTAATTGTGCTGTAATAAGAACCATAAGCTTCAATTACATAGTTCACCTTAATTCACCAGTGCTTTGAACCCTGtatttcttcttcttaaaaTAAGACCCGCAAAAAAACAAGACGTGAAAAACCGTAAGTGATCCTAAAAGAGAAAATGTCAATATTTCATGTAAAGTGAGGGTGAGGAGACTTGCCAttgctcttttttcctctttctgtaTGTTAATGATGGCTTTCATGTGTGTACTACACAGCATTATTAACAAGTGAGCAAATTAATCCATCACCAACGTGAACCACAAGTACAACACATTTAGAACAGAGTGATTCAGACGAGACCACCATGAGCAGAACAGTCACAGACTTTAACAGTTCCAGTAAGAGCATGTGTAACATAGGCATGTGTGGATCTGAGTGTGGGTGTTTGTTGTCCACTATTAATCTAaatagaaagtgtgtgtgtctgtcacaCAAGAAGAATGCTTCATATCCTTGGCCAATGCTCCAGCCTCTATTCACTCTGACCAAACATATGTTAGGAGTGTAAGAAAATAGATATTAAAGTATCCCAATATTTGAGTTTGCAATAGTGTATTGCTTTTCAAAAACCTAGAactgattttaaattatttttgtttcacaTATTAGATTTGTATTGTGATTAAACCCTAAATGCTAGAGGGCAGCTTTAAACTCTCCTTAGATCACATTGTTATTACTGATTGAATAAAAAGTTAACTTTTGTTTGACTTAGATTTAAATGTAGTGTCGTTTGGAATATACtgaattgtaacccctgtatcataatacattttctattgCAAATATCTAGCCAGCCCTAACATGCatccatacatttttttctttttttaaacccagGAATGTATTTTAGTCTCTATTCTGAGCATTCTGGACGCCCATCCTCAAACTGACACCCCTCTAACCTCCCTTTCCTTACGATGGTACCATCTAGATGACGTTTCTACCACAGCTCCTGATGGTTGGcattattactactacaacaACCATGAATTGTGAACGAGCTGGAAATGGGATTTGAGAGGCAGGTGGTGTGGCATTAATAGGAGGCACACGTGTTCCTATTAATGAACAGGGCCTTTCTATgactagcagtagtagtagtgctATTTTAGACAGAGTGCAGTCTGTGCACTTCTGTGGGCTATCAAACACTGTTGTACTCATTCAGCTAGAGGTGGAGCAGTCTACGGTAAGCCTAAGGTAATAGTGTGGTGTGTAAGGTTTATAACAAGTTCATACaaacgcacgcacgcacacacaacaGATCCACATGAAAAAGTCGTTTCCCACACCCCTGGAGGTGTTCCTTATTTCACttcatttcttttaaatatatatttatagaactTTACACGTATAGTaagtttaacattaaaaaaaagcttgaaaattagttttaaaactTCAAATCGTTTAACACAAGATACTATCTGTCCAATACAGCCTCagccaaaaggaaaaaaaaaaaaaaaaaaaagagttccaCATTACACAGAATACTAAAACCCAGAACCACTCAAACTTTCCCACAGACCTtggtttaaaacaataaaaaaaataaaatacaacgcACACAGAAACACTCCTTTAAAAGCCTAAAGACTACACTTTGGTGCTTTTTGATATGAAGAACTTTTAAACtctgcagatttttttaatgacgCTCGTTTTCTGATTAGTTGACATTCCCTTAATTCTTTAAACAGGTCGTATTCAAAAATCTACAAAGTGTACAAGATGGTGGATTTAAGATCGTTCCCTTTTAAACTTTACcagtttaggtttaagttttttttttccccctcttttttcattttgtacTGCCCCTTCCCTCCCCGTCCCACTTTACTTACATAAATGCTTTTCAAAATTGATTGTAGCTTCTGGTGTTTTTctctagtctttttttgtttttgtttacaatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47020 lncRNA upstream 90042 6718790 ~ 6719186 (+) True G34930
TU47011 lncRNA upstream 119089 6689792 ~ 6690139 (+) True G34923
TU47004 lncRNA upstream 139237 6669762 ~ 6669991 (+) True G34916
TU46988 lncRNA upstream 145245 6663657 ~ 6663983 (+) True G34903
TU46985 lncRNA upstream 145621 6592607 ~ 6663607 (+) True LOC103029551
TU47147 lncRNA downstream 45561 6987832 ~ 7050629 (+) True G35031
TU47150 lncRNA downstream 63505 7005776 ~ 7009917 (+) True G35034
TU47156 lncRNA downstream 75042 7017313 ~ 7020803 (+) True G35037
TU47270 lncRNA downstream 134417 7076688 ~ 7077157 (+) True G35096
XR_002649863.1 lncRNA downstream 173584 7115855 ~ 7119167 (+) True LOC111192361
XM_007259362.3 mRNA upstream 32700 6733311 ~ 6776528 (+) True LOC103046215
XM_007259314.3 mRNA upstream 104230 6698639 ~ 6704998 (+) True LOC103031150
XM_022669020.1 mRNA upstream 104230 6700259 ~ 6704998 (+) False LOC103031150
XM_007259311.3 mRNA upstream 129207 6675542 ~ 6680021 (+) True LOC103030206
XM_007259309.3 mRNA upstream 145641 6619670 ~ 6663587 (+) False LOC103029551
XM_007259325.3 mRNA downstream 79576 7021847 ~ 7028159 (+) False LOC103033683
XM_007259326.3 mRNA downstream 79667 7021938 ~ 7028159 (+) False LOC103033683
XM_022669032.1 mRNA downstream 79725 7021996 ~ 7028159 (+) True LOC103033683
XM_022669033.1 mRNA downstream 79735 7022006 ~ 7028159 (+) False LOC103033683
XM_007259333.3 mRNA downstream 86860 7029131 ~ 7040685 (+) True kctd2
TU47021 other upstream 77804 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 145641 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 147977 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 2631145 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 4752354 2050798 ~ 2056874 (+) True amz2
TU48089 other downstream 3531103 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 3531103 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 4052090 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 4052090 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 4859187 11801458 ~ 11802204 (+) True G35903

Expression Profile