RNA id: TU47156


Basic Information

Item Value
RNA id TU47156
length 416
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G35037
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7017313 ~ 7020803 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAGGTGGGCCTGGTTGGTAGGCAGAAGCTGGGCCATTGTATGGCGCAAATTGGGCTGGATAACCACCTGGCACTTGCTGGCCCCCATAACCAGACTGAGGGTAGCCTTGGTAGCCAGGCTGCGGCTGCCCATAAGGAGAGGCCATGTGAGGTTGCTGGTTAACATTCATTTTCAGTTCATCACTAAATCTCCAATCCAGACAGATATATAAACGAACAAGCTAACAGGACAGCCAGCCACGCCCGTTCCCCAGCTGACAGGCGCTCTTCTACAAAACCAAGAGTACAATCGTCGTCTTCCCAAAGCGGTCTCGCCGTTAGCCGTCGTTAATCCCTCTTCCACCTCCTCGGTGTCTCCGCTACAGCTGACATTCGCACCGGATCCACAGTAACTTTGTGCCACGTCCACATCCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47150 lncRNA upstream 7396 7005776 ~ 7009917 (+) True G35034
TU47121 lncRNA upstream 75042 6809228 ~ 6942271 (+) True G35012
TU47131 lncRNA upstream 119920 6892505 ~ 6897393 (+) True G35017
TU47129 lncRNA upstream 125509 6880483 ~ 6891804 (+) True G35016
TU47130 lncRNA upstream 125509 6880483 ~ 6891804 (+) False G35016
TU47270 lncRNA downstream 55885 7076688 ~ 7077157 (+) True G35096
XR_002649863.1 lncRNA downstream 95052 7115855 ~ 7119167 (+) True LOC111192361
TU47275 lncRNA downstream 95276 7116079 ~ 7119127 (+) False LOC111192361
TU47276 lncRNA downstream 95322 7116125 ~ 7119127 (+) False LOC111192361
TU47277 lncRNA downstream 95322 7116125 ~ 7119127 (+) False LOC111192361
XM_007259318.3 mRNA upstream 140280 6778202 ~ 6877033 (+) False LOC103031986
XM_007259317.3 mRNA upstream 140280 6780746 ~ 6877033 (+) False LOC103031986
XM_022669021.1 mRNA upstream 140280 6822504 ~ 6877033 (+) True LOC103031986
XM_007259362.3 mRNA upstream 240785 6733311 ~ 6776528 (+) True LOC103046215
XM_022669020.1 mRNA upstream 312315 6700259 ~ 6704998 (+) False LOC103031150
XM_007259325.3 mRNA downstream 1044 7021847 ~ 7028159 (+) False LOC103033683
XM_007259326.3 mRNA downstream 1135 7021938 ~ 7028159 (+) False LOC103033683
XM_022669032.1 mRNA downstream 1193 7021996 ~ 7028159 (+) True LOC103033683
XM_022669033.1 mRNA downstream 1203 7022006 ~ 7028159 (+) False LOC103033683
XM_007259333.3 mRNA downstream 8328 7029131 ~ 7040685 (+) True kctd2
TU47135 other upstream 113316 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 285889 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 353726 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 356062 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 2839230 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 3452571 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 3452571 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 3973558 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 3973558 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 4780655 11801458 ~ 11802204 (+) True G35903

Expression Profile