RNA id: TU47266


Basic Information

Item Value
RNA id TU47266
length 1686
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G35094
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7064525 ~ 7066706 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caaaatcTTAAATTTGGTTAAAAGCCAAGGAATAAAAATGAGTCTTTAGCCTGGTTTTAATCATGGACAGTGACGGGGCTTGTCTGATTTGACGTTTTGAGGGGTGTATGATAGTAAAATGTGTCTTTGTTCCAAACCTTATCAAGAGCACTGTATGAATAAACATACCGCATGCTGAGTGTTGCTGTCCAACTTGCTGGTGGCTTCATCAAGAATTAGTATTTTTGGAGTCCTTATCATAGCTCTGGCAATAGCAATGCACTGCTTCTGTCCTGAAGACAGCCTCTCCCCACGCTGTCCAACATCTGAAGCAATGTAACAGACAGTAGAAATAGGGGAATGAACATCAGTTGTAGATCCATGCTATATACATAAgacaaaacattttacaaaagaACAAATCAGTTCAATGTTTTCACCTGTATCATAGCCTTGATCCATATTATGAATGAACTTGTTCACACTAGCTTTCTTTGCTGCATCTTGCACTCTCTCTTCAGAGCAGCCATGTAGCCCGTACTCAATATTGTACTTTATTGAGCCAGAGAAGAGCTCGGGATTCTGGGACACAGCTGCCATCTGTGacaatggaaaaatataaagtgaaataccaataaaacattttgatttaGATATTGGGCTACTCTGTTATGGTTTTTTATTCAACtaatatactgtagtatagtatagtatagtacatgCAAAAGTACATACTCTCTCGTACTCATATGAACATTTATTAACAGCTCTATTATTGTGGTCAAAATTCACTTTTATCAGTTTGGCTTCCTTCAAAACAAACTGCACTAAATTAAGCTAGAGCTAACCACATATCAGAAAGGGAATTTTAAAGCGGCAAGCAAAATAACCCACCTAGGTAAGCAGGGAGGTATCCTtcctaggctaaaagctaactgaCTGGCATTAATCTCTTTTGCTATCTAACCCCATGCTGAGAGGACACTGAGGATAGACAAACTATCCCGTGAGACTCTGtaataattacaaaatatgAATGAAGATAGATTGTTACAGTGGATACAGTGGATCCCAATTAgctgtaaaaaacacaaaagctaCTCTTTCTGGTGTCCCCATAAAAACAAACTTCAAAAACATAATTGTAAAAGCTGTAAATCAATACAAATCATTAAACATCTTAAATTGGTATGTTCTATTGCTCACCTGACTGCACAGGTACCGTTGCTGGTAGTGATAAATTGGAACACCGTCTAATAGCACTTCTCCTTTCTGAGGCTCATAAAACCTCTGCAGCAGACTAACGCAAGTACTCTTCCCTCCACCAGACGGGCCCACCAGCGCGGTCATCTTCCCGGGTTTCAGCTCCAGACTTACAGACTGATATAACAATCTTGTATGCTTATTTTTCATGATACTTAAGAAATACAGCAcagcattatttaaatattaatttattaaagattaaagatatattgttgtgtttttttttttacttttaaaacaaagcaaaataaaaagtgttacctTAAGTGCCTCACGAGAAGGATAAGAGAAGGTAACATTGTCAAACGTGAGTCTTCCTTCTAGTTTCGGAGGAACAAAGTCGCCTGCTTCTCTTACTGTCGCTCTTCTGTCAAGCAGCTGAAACACCTTCTCTGCTGACCACACTGTGTTCAGGATGTCTCCATAAACATACACCAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47231 lncRNA downstream 23883 7036261 ~ 7040642 (-) True G35078
TU47229 lncRNA downstream 28707 7034730 ~ 7035818 (-) True G35077
TU47220 lncRNA downstream 102532 6961173 ~ 6961993 (-) True G35069
TU47100 lncRNA downstream 333026 6730942 ~ 6731499 (-) True G34998
TU47099 lncRNA downstream 335371 6728861 ~ 6729154 (-) True G34997
TU47273 lncRNA upstream 10519 7077225 ~ 7077629 (-) True G35099
TU47316 lncRNA upstream 55777 7122483 ~ 7123019 (-) True G35135
TU47409 lncRNA upstream 336463 7403169 ~ 7404536 (-) True G35203
TU47408 lncRNA upstream 336976 7403682 ~ 7404536 (-) False G35203
TU47411 lncRNA upstream 336976 7403682 ~ 7404536 (-) False G35203
XM_007259330.3 mRNA downstream 43756 7002140 ~ 7020769 (-) False sec24c
XM_007259327.3 mRNA downstream 43756 7002140 ~ 7020769 (-) True sec24c
XM_007259331.3 mRNA downstream 43757 7002140 ~ 7020768 (-) False sec24c
XM_007259329.3 mRNA downstream 43757 7002140 ~ 7020768 (-) False sec24c
XM_015608353.2 mRNA downstream 71635 6886709 ~ 6992890 (-) False LOC103032713
XM_022669034.1 mRNA upstream 2503 7069209 ~ 7075841 (-) False faap100
XM_007259335.3 mRNA upstream 2503 7069209 ~ 7075841 (-) True faap100
XM_007259336.3 mRNA upstream 30336 7097042 ~ 7104020 (-) True chad
XM_007259338.2 mRNA upstream 46420 7113126 ~ 7115766 (-) False armc7
XM_007259339.2 mRNA upstream 46420 7113126 ~ 7115764 (-) True armc7
TU47076 other downstream 410940 6619680 ~ 6653585 (-) True G34981
TU47043 other downstream 523161 6537021 ~ 6541364 (-) True G34953
TU47031 other downstream 550824 6465368 ~ 6513701 (-) False LOC103026268
TU46775 other downstream 1125125 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 1136371 5907974 ~ 5928154 (-) False ccdc186
TU47717 other upstream 1858122 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 2137864 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 2359369 9426075 ~ 9431164 (-) False rpl38
TU47867 other upstream 2360130 9426836 ~ 9431164 (-) False rpl38
TU47869 other upstream 2360130 9426836 ~ 9431228 (-) True rpl38

Expression Profile