RNA id: TU47270


Basic Information

Item Value
RNA id TU47270
length 448
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G35096
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7076688 ~ 7077157 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgttgtagaaaagaaaatgaacgaccggggtacaactcccctgcgtgttcgtttgatagagagagtcagacaggtggagtgaagttgaaagcaaaccaagtatttattacaaagcactgaatattcaggagaacccacacatgaaagaccgtctaacagccgtcccagcataagttctgaccccccctctgatctgactccatgtttataccccaaatgacgtgaaacctgctgatgaggcgttgctaaaatcatctcatgttagtagGCATATTCTCACGTGTTAGTGttcaagtttcacaggtctgaccggaccactagtgtttggccttgactgtgttcttccagaatggaacatcgtggcactatctgtgtgtgtgcgtcaccccccgctttgaagcagaggtttttagggaggcactcactcaccaaaaggcCGCTTTGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47147 lncRNA upstream 26059 6987832 ~ 7050629 (+) True G35031
TU47156 lncRNA upstream 55885 7017313 ~ 7020803 (+) True G35037
TU47150 lncRNA upstream 66771 7005776 ~ 7009917 (+) True G35034
TU47121 lncRNA upstream 134417 6809228 ~ 6942271 (+) True G35012
XR_002649863.1 lncRNA downstream 38698 7115855 ~ 7119167 (+) True LOC111192361
TU47275 lncRNA downstream 38922 7116079 ~ 7119127 (+) False LOC111192361
TU47276 lncRNA downstream 38968 7116125 ~ 7119127 (+) False LOC111192361
TU47277 lncRNA downstream 38968 7116125 ~ 7119127 (+) False LOC111192361
TU47278 lncRNA downstream 48797 7125954 ~ 7159316 (+) True G35102
XM_007259334.3 mRNA upstream 8160 7057908 ~ 7068528 (+) True LOC103036712
XM_015608397.2 mRNA upstream 20259 7043482 ~ 7056429 (+) True slc16a5
XM_007259332.3 mRNA upstream 20259 7043483 ~ 7056429 (+) False slc16a5
XM_007259333.3 mRNA upstream 36003 7029131 ~ 7040685 (+) True kctd2
XM_007259325.3 mRNA upstream 48529 7021847 ~ 7028159 (+) False LOC103033683
XM_007259337.3 mRNA downstream 1632 7078789 ~ 7112191 (+) True acsf2
XM_022669035.1 mRNA downstream 198590 7275747 ~ 7292804 (+) True LOC103039861
XM_007259343.3 mRNA downstream 229149 7306306 ~ 7335081 (+) True LOC103040176
XM_007259344.3 mRNA downstream 229149 7306306 ~ 7335081 (+) False LOC103040176
XM_022669036.1 mRNA downstream 275929 7353086 ~ 7466457 (+) True ankfn1
TU47135 other upstream 172691 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 345264 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 413101 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 415437 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 2898605 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 3396217 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 3396217 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 3917204 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 3917204 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 4724301 11801458 ~ 11802204 (+) True G35903

Expression Profile