RNA id: XR_002649863.1


Basic Information

Item Value
RNA id XR_002649863.1
length 1198
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC111192361
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7115855 ~ 7119167 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATCACTGCGCCATTTGAGACTGAGCCGGGGTTCACCTCTCTGGATCTTCCCCCTGGATAATTCAGCAATGTTTTGTAGTTCCTCTCAAACATTGACTTTGTCGTAAATATTTTGAAACCTACTTTTACGTTTCACTCGAGGCTACAACGATTAATTTGggttattgtacttttattataatttttaaatgtatattaaagtgGCAGTAAATGAAAAATCCAAGTAGATATTTGAGAATCACGCTTTATAAACTGCTGGCCGGAGGAAGTGGGGGCGTGTAGCTAACGTTACGTGTTTTGGTGCATGTCTGGAGCTTTATATTCCAGCATGAAGCAGTACACTTTATCAGCAAAAAAGCGTCTGGCCAAGCCGCTGCTGTTCGGCGCTTTACTCACAGGACTTGCAACAGCGTTCTATAACAGGCATTTGTTCTTTGAAGACCTGGCAGAAATTCGGGAGCAGGAGCGAGCTCGCACTGATGCCAAACTTTTAGAAGTGTTAGAAAGAAGACAGAAACAAATGGAAGAGCTGGAGTCAAAgaaaagtgctggggacaggtGAGCTTATCACACACCTCCAGGCAAAGGTAATCAGAGTGACACTGATGGGGGTTAGGAGTTTGAGTTTTGTGATGAACTGAAAAATTTATGACCGCTATAAAGAAAAATGGTGaattaggaataaaaaaaagaagtcaaCAGAAGGACCTTCAATTTTCTGTGGACTGGAAGCTCAATTTGACTCTGGACACCTCCTCACTACTGAAGTGTAATCACAGGATTGAAGATCTGAAGATTCCCAAGACAGGCGAACAAAAACAAACTGTATTACTGTTGGTTATGTGAGTTCCtaatttgtttaatatataagCTTAAATAAGATGCATTTTCTCTCTCAGTGTAAAACATTAACTCACAATAAAGATAAGTGTTATAGTGTGTTCCATGATGAATGCTTCTTTTGAAGTGCATTTCCTCTGCCTAGTATCTGCCCAATAATGGGATTACAGTGTACAAAATCAGAATACTGcttacatttaatttctgtaTGAATATCTACaagtaaaaatctaaaatatacatGAAAGTGTTTTGAGCAAAAGCTGAACATTTTCAGTGAAAGATGAATGTAAATGTTCACATTAGTGAGAAAATGgaaatgtttgtatgtttttaaaataaagaaatcaacTCTTta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47270 lncRNA upstream 38698 7076688 ~ 7077157 (+) True G35096
TU47147 lncRNA upstream 65226 6987832 ~ 7050629 (+) True G35031
TU47156 lncRNA upstream 95052 7017313 ~ 7020803 (+) True G35037
TU47150 lncRNA upstream 105938 7005776 ~ 7009917 (+) True G35034
TU47121 lncRNA upstream 173584 6809228 ~ 6942271 (+) True G35012
TU47278 lncRNA downstream 6787 7125954 ~ 7159316 (+) True G35102
XR_002649864.1 lncRNA downstream 111086 7230253 ~ 7231321 (+) True LOC103039044
TU47325 lncRNA downstream 114468 7233635 ~ 7233863 (+) True G35143
TU47334 lncRNA downstream 202753 7321920 ~ 7322957 (+) True G35148
TU47458 lncRNA downstream 988993 8108160 ~ 8108470 (+) True G35244
XM_007259337.3 mRNA upstream 3664 7078789 ~ 7112191 (+) True acsf2
XM_007259334.3 mRNA upstream 47327 7057908 ~ 7068528 (+) True LOC103036712
XM_015608397.2 mRNA upstream 59426 7043482 ~ 7056429 (+) True slc16a5
XM_007259332.3 mRNA upstream 59426 7043483 ~ 7056429 (+) False slc16a5
XM_007259333.3 mRNA upstream 75170 7029131 ~ 7040685 (+) True kctd2
XM_022669035.1 mRNA downstream 156580 7275747 ~ 7292804 (+) True LOC103039861
XM_007259343.3 mRNA downstream 187139 7306306 ~ 7335081 (+) True LOC103040176
XM_007259344.3 mRNA downstream 187139 7306306 ~ 7335081 (+) False LOC103040176
XM_022669036.1 mRNA downstream 233919 7353086 ~ 7466457 (+) True ankfn1
XM_007259346.3 mRNA downstream 353740 7472907 ~ 7475245 (+) True nog
TU47135 other upstream 211858 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 384431 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 452268 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 454604 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 2937772 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 3354207 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 3354207 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 3875194 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 3875194 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 4682291 11801458 ~ 11802204 (+) True G35903

Expression Profile