RNA id: TU47409


Basic Information

Item Value
RNA id TU47409
length 342
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G35203
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7403169 ~ 7404536 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaatgtatatacactaagttgtacaaatgtattttttttttactttaaaactttgattttaaagttttaccacatttacttcCTGAAATCCCCCTTGAAATCCTAccccttgttgggatcagggtaatcctgtttttttggatcaaagttatccaaatcctactgaaaagttttgaacaacagaaactgaaggtttgatccatttacaaactaggattggattacgtgatctgatccgatttcagaatgcttctttcccttttgaacaacccgttttccagatttgatccaatccgataaccaaaatccgatcagattaCCTCTGAACAACTGGCCCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47316 lncRNA downstream 280150 7122483 ~ 7123019 (-) True G35135
TU47273 lncRNA downstream 325540 7077225 ~ 7077629 (-) True G35099
TU47266 lncRNA downstream 336463 7064525 ~ 7066706 (-) True G35094
TU47231 lncRNA downstream 362527 7036261 ~ 7040642 (-) True G35078
TU47229 lncRNA downstream 367351 7034730 ~ 7035818 (-) True G35077
TU47480 lncRNA upstream 645006 8049542 ~ 8051653 (-) True G35266
TU47535 lncRNA upstream 890294 8294830 ~ 8360237 (-) False G35306
TU47537 lncRNA upstream 899768 8304304 ~ 8360237 (-) False G35306
TU47544 lncRNA upstream 914684 8319220 ~ 8336288 (-) True G35310
TU47533 lncRNA upstream 943088 8347624 ~ 8376030 (-) True G35306
XM_022669412.1 mRNA downstream 52710 7348746 ~ 7350459 (-) True LOC111192401
XM_007259340.3 mRNA downstream 131570 7267937 ~ 7271599 (-) True LOC103039244
XM_007259341.3 mRNA downstream 137466 7248965 ~ 7265703 (-) True LOC103039554
XM_007259363.3 mRNA downstream 173208 7172667 ~ 7229961 (-) True LOC103046826
XM_007259338.2 mRNA downstream 287403 7113126 ~ 7115766 (-) False armc7
XM_022669046.1 mRNA upstream 916713 8321249 ~ 8338621 (-) False LOC103037651
XM_022669045.1 mRNA upstream 916713 8321249 ~ 8338619 (-) True LOC103037651
XM_022669044.1 mRNA upstream 916713 8321249 ~ 8325028 (-) False LOC103037651
XM_007259645.3 mRNA upstream 958447 8362983 ~ 8375681 (-) True LOC103029555
XM_007259646.3 mRNA upstream 958447 8362983 ~ 8370779 (-) False LOC103029555
TU47076 other downstream 749584 6619680 ~ 6653585 (-) True G34981
TU47043 other downstream 861805 6537021 ~ 6541364 (-) True G34953
TU47031 other downstream 889468 6465368 ~ 6513701 (-) False LOC103026268
TU46775 other downstream 1463769 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 1475015 5907974 ~ 5928154 (-) False ccdc186
TU47717 other upstream 1520292 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 1800034 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 2021539 9426075 ~ 9431164 (-) False rpl38
TU47867 other upstream 2022300 9426836 ~ 9431164 (-) False rpl38
TU47869 other upstream 2022300 9426836 ~ 9431228 (-) True rpl38

Expression Profile