RNA id: TU47458


Basic Information

Item Value
RNA id TU47458
length 283
lncRNA type intronic
GC content 0.43
exon number 2
gene id G35244
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8108160 ~ 8108470 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACGCTCCCTGCTTTTTGCTCTTCCTTGAGTAGAGTTGTGTCTTTTTATAGTACTACAACCCAACCCTTGTGCatccttttatatatatgtgtctaTGTGCCCGTCATGCAAGATAAGGAAAATAGCACTTTTTATACTAAACAGAGAATTTAAAACGGATCTGAAAAGCAGAAAAACGCAGAATAAAAGCAGACGCAGCCAGAGACAGGAACTGTGTGTTCTAGTGTAGCAGCGCTCTCTCAGTGTGTTCCAGAGGCTGTAGTGCTGAACAGCGAGCTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47334 lncRNA upstream 785203 7321920 ~ 7322957 (+) True G35148
TU47325 lncRNA upstream 874297 7233635 ~ 7233863 (+) True G35143
XR_002649864.1 lncRNA upstream 876839 7230253 ~ 7231321 (+) True LOC103039044
TU47278 lncRNA upstream 948844 7125954 ~ 7159316 (+) True G35102
TU47276 lncRNA upstream 989033 7116125 ~ 7119127 (+) False LOC111192361
TU47516 lncRNA downstream 277703 8386173 ~ 8438864 (+) False fasn
TU47524 lncRNA downstream 298381 8406851 ~ 8407393 (+) True G35299
TU47525 lncRNA downstream 299010 8407480 ~ 8408610 (+) True G35300
TU47519 lncRNA downstream 358675 8467145 ~ 8472989 (+) False LOC103037241
XR_002649866.1 lncRNA downstream 365770 8474240 ~ 8491221 (+) True LOC111192363
XM_007259346.3 mRNA upstream 632915 7472907 ~ 7475245 (+) True nog
XM_022669036.1 mRNA upstream 641703 7353086 ~ 7466457 (+) True ankfn1
XM_007259343.3 mRNA upstream 773079 7306306 ~ 7335081 (+) True LOC103040176
XM_007259344.3 mRNA upstream 773079 7306306 ~ 7335081 (+) False LOC103040176
XM_022669035.1 mRNA upstream 815356 7275747 ~ 7292804 (+) True LOC103039861
XM_007259648.2 mRNA downstream 239133 8347603 ~ 8360253 (+) True LOC103030301
XM_022669049.1 mRNA downstream 253029 8361499 ~ 8401643 (+) False ccdc57
XM_022669048.1 mRNA downstream 270015 8378485 ~ 8401643 (+) False ccdc57
XM_022669047.1 mRNA downstream 271102 8379572 ~ 8401643 (+) True ccdc57
XM_007259642.3 mRNA downstream 271102 8379572 ~ 8401643 (+) False ccdc57
TU47135 other upstream 1204163 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 1376736 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 1444573 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 1446909 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 3930077 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 2364904 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 2364904 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 2885891 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 2885891 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 3692988 11801458 ~ 11802204 (+) True G35903

Expression Profile