RNA id: TU47519


Basic Information

Item Value
RNA id TU47519
length 1368
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC103037241
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8442132 ~ 8472989 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcagactacagtcgATATACTGGTGATTATACTCCCCTCTAAATggctagagaaaaaaaaaaaaaaaaaaaaaaaaaagcttttgacATCCAAACGTAAAAACTAATCAACACAAACGCCAGTAGAGGGCTCTCACTGTCCTCCGGCCTCCATCTGTCAAAATCTGACTACAGATTTTTAAACCCGGTTTTGGAAAATAGTTTCCGAAATACGCTCttcaggataaaaaaaaaaaaaaaaatcaataaaaaacaagaatggTGAGCCAATGCCTTGAGCATGTACCAGACCTGCATGGAAAAATGGTGGACGATCCAGTGGGGTTAAGTAGTGGGACGCACCAATTCAGACACGCACAAGCACACCTTTGTCTTCTCCTGACCATGCGCACCTCCAcctttaatccctgtctggttTTGTTTTCCTGCCCCCTTCCCCACCATCTCTGAATATGAATAACAgtagtgttgctaaatggttaatCGGACCTTTTgcatctgtttctttctctgtttgaaCTGTAATGGTTTCACTCCTGCACCCCCTGACTTTCTGGAGGGTTTAGATCATGTCTGTCTACATGGTTCAGTCGTCTCTTAACTGCCCCGATGGCCCAGCTGTGCCCGCCGTCAGCACCAGTGCCTGCTTGTGTGAAGGAgtgaatgtgtgagagagagagagagagagagagagagagagaagagaagggggGGAAAAAAGACCACAGTCTGTTTTTTGCTCAGAGAGAGTGATCGTGAAAAGGAGGGAGGACCATTCCTGCAGCTTGATCTAAAGAAATCGCCCCACCCACCCGTGACCCAGTTTGACGACTTCTTAGAATGATGGAGGAGTCTAGTTGTccaacttcttcttcttcttcttttttttctttttttttagttggttTCCAGACTTTCCAACaagtttatttttcttatttcttttccttgctcttattttttgtttaaactgtacttttaaaaaaagaaaagtgtgagGAGTTTATTGCAACTTGCATTAAAACCCAAGAGTTCATTCCTTTGTACAGTTGCTAAGTAATaatggagtaaaaaaaaaaaagttttattaaaaGTTGCAGTGATTTACTAGTATATCATATGTTGTATTCATAAATTATTGCCACACATTTTCCTTTGCACCCTGATCGGACGGAGTGGAGCTAGTGCTATTGGACAGTAGGAAGATGAGTGTCGGAAGGTCACGGCCAAGGACTGGACATAACCAACCCCGCTACATCAGAATCTGGGCAGGGTCACCTGGGGTCAGAAGGTCAAATGTGAAATGTATGTATTGTAATAAACATGCTAAAAGTAAAACAGAGTGCTTGTCTTCGGTCATCATTTGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47516 lncRNA upstream 28281 8386173 ~ 8438864 (+) False fasn
TU47525 lncRNA upstream 58535 8407480 ~ 8408610 (+) True G35300
TU47524 lncRNA upstream 59752 8406851 ~ 8407393 (+) True G35299
TU47458 lncRNA upstream 358675 8108160 ~ 8108470 (+) True G35244
TU47334 lncRNA upstream 1144188 7321920 ~ 7322957 (+) True G35148
XR_002649866.1 lncRNA downstream 1251 8474240 ~ 8491221 (+) True LOC111192363
XR_002649865.1 lncRNA downstream 6533 8479522 ~ 8491221 (+) False LOC111192363
TU47529 lncRNA downstream 6890 8479879 ~ 8491226 (+) False LOC111192363
TU47610 lncRNA downstream 79421 8552410 ~ 8552834 (+) True G35359
TU47612 lncRNA downstream 84247 8557236 ~ 8560349 (+) True G35361
XM_022669052.1 mRNA upstream 28280 8404717 ~ 8438865 (+) True fasn
XM_022669049.1 mRNA upstream 65502 8361499 ~ 8401643 (+) False ccdc57
XM_022669048.1 mRNA upstream 65502 8378485 ~ 8401643 (+) False ccdc57
XM_022669047.1 mRNA upstream 65502 8379572 ~ 8401643 (+) True ccdc57
XM_007259642.3 mRNA upstream 65502 8379572 ~ 8401643 (+) False ccdc57
XM_007259650.3 mRNA downstream 9882 8482871 ~ 8487451 (+) True LOC103030936
XM_022669058.1 mRNA downstream 126193 8599182 ~ 8703597 (+) True pald1
XM_022669059.1 mRNA downstream 138696 8611685 ~ 8703597 (+) False pald1
XM_022669060.1 mRNA downstream 148891 8621880 ~ 8703597 (+) False pald1
XM_022669062.1 mRNA downstream 246365 8719354 ~ 8851392 (+) True LOC103024481
TU47135 other upstream 1563148 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 1735721 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 1803558 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 1805894 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 4289062 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 2000385 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 2000385 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 2521372 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 2521372 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 3328469 11801458 ~ 11802204 (+) True G35903

Expression Profile