RNA id: TU47524


Basic Information

Item Value
RNA id TU47524
length 210
lncRNA type intronic
GC content 0.40
exon number 2
gene id G35299
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8406851 ~ 8407393 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tattattattattattctcggTAAACATACCTTGACATACCATAAACTTGACAACCACcacaaacaccatagcaaccacctagcaaccaccacagataccatagcaacaccttagcaaccaccaagcaacaccttagcaaccacctggtatatGTTAGCAAtttcctagcaaccacttagcaaccactttagaaattatagcaaccgcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47458 lncRNA upstream 298381 8108160 ~ 8108470 (+) True G35244
TU47334 lncRNA upstream 1083894 7321920 ~ 7322957 (+) True G35148
TU47325 lncRNA upstream 1172988 7233635 ~ 7233863 (+) True G35143
XR_002649864.1 lncRNA upstream 1175530 7230253 ~ 7231321 (+) True LOC103039044
TU47278 lncRNA upstream 1247535 7125954 ~ 7159316 (+) True G35102
TU47525 lncRNA downstream 87 8407480 ~ 8408610 (+) True G35300
TU47519 lncRNA downstream 59752 8467145 ~ 8472989 (+) False LOC103037241
XR_002649866.1 lncRNA downstream 66847 8474240 ~ 8491221 (+) True LOC111192363
XR_002649865.1 lncRNA downstream 72129 8479522 ~ 8491221 (+) False LOC111192363
TU47529 lncRNA downstream 72486 8479879 ~ 8491226 (+) False LOC111192363
XM_022669049.1 mRNA upstream 5208 8361499 ~ 8401643 (+) False ccdc57
XM_022669048.1 mRNA upstream 5208 8378485 ~ 8401643 (+) False ccdc57
XM_022669047.1 mRNA upstream 5208 8379572 ~ 8401643 (+) True ccdc57
XM_007259642.3 mRNA upstream 5208 8379572 ~ 8401643 (+) False ccdc57
XM_007259648.2 mRNA upstream 46598 8347603 ~ 8360253 (+) True LOC103030301
XM_022669053.1 mRNA downstream 34739 8442132 ~ 8472962 (+) True LOC103037241
XM_007259650.3 mRNA downstream 75478 8482871 ~ 8487451 (+) True LOC103030936
XM_022669058.1 mRNA downstream 191789 8599182 ~ 8703597 (+) True pald1
XM_022669059.1 mRNA downstream 204292 8611685 ~ 8703597 (+) False pald1
XM_022669060.1 mRNA downstream 214487 8621880 ~ 8703597 (+) False pald1
TU47135 other upstream 1502854 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 1675427 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 1743264 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 1745600 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 4228768 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 2065981 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 2065981 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 2586968 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 2586968 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 3394065 11801458 ~ 11802204 (+) True G35903

Expression Profile