RNA id: XR_002649866.1


Basic Information

Item Value
RNA id XR_002649866.1
length 1512
lncRNA type sense_over
GC content 0.37
exon number 5
gene id LOC111192363
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8474240 ~ 8491226 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcagaagcttatagaaacaatgccacagcgaataTGTTAAGCAATGAAAGCTCAAggcggtccaacaaaatattttggCCAAGCAGTTAGTATTTATATGACTGACATTTTTATAACCCGTAGTATAACCAGTAGTCTTTATTCAAAGAGTAAGGATATAAAAGTGCATTAATATGCTGTAATATATGTAATCTATATAAAAATCTAGAGTTTAGTTTTTAGGTTGTTTAGTTTTCCgtgtttttttagattatcataGATTAAATATCGgttctctttctcatttaatccgtgcttttaatgtttttttttttatgaaaataaattagTGTTATATTTGGGGGTCCAGTTCCCAGTCCACACACTCATTTCTACTCACCTGGATTTTTTCTAATCAGTCAAATGCTTCCATCTACTGGTGAAATATTGGTACAGCGacattttaaggtggaatggaaataaCTTGAAAAATAAATAGCTAACCTGGGCCTCGTCACTGCTTACCTGTTTAAAAGCTCAGGTGgcacaaacagcacaacctctcctgtaaaaacaaacatagTTCTGTTAGGTGCTGCTAAGATTTACCACACAAGCCCACCAAACATAAAAGCTGCCTAAGTAGTCATCTATAGtcctgttgtttatttattttcttagtttGCTCTGTTcttacatttcacatttttatttgttgcatgtatttgtattgttttaaattatgcatttaggtgtttttatttttttctctttcattttcatatttactgTACAATAGCTCAGTTGAttgtttctctctcattttactATTTCCCCcccattttatatatgtttgtgcaaaataaataaattataaaaggGATAATGGAAAGAGAAGTGTACTTGTACCCAAATTACCCATATTAGGCTCATTTTAATACAAGATAATCCCATAACAATAgataaaacacatataaacacaaatcAAAACTCCACAAAAATGCATGAAAagtccctaaaataagcaactGCAACATTTTCTCACATTTAAGCCACTGCAGTGTCTAATACCAAtctgttctttttctcttttggtTGTAAAGGGTATAGGCACCTTCCCCTCTCACACCAGCCAGGACTCAGGTCAGATTTCCTCTTATGATTCATTTGGCTAAGCAGCTACACCAGTGAAGGTGTGAACAATAAACACGTAATGTGTAAACGGAGCCACAAGCCCTTCACACCCCTCTCAGAAATCTCCCTCTTTAAACTCTGGCTTGATGACCCCTCCCCTCctaaaaaaaaggccagGCCTGCAGTGACTGTGAGGGGAAGATATAAACAGGACTTCATGAAACAGGTGACCTTGCTGCGAGTCAGGACCCCTGCAAGACGCCATTAGCGGGCCGTCCACTTAACAGCCGCTAGCATTAGACAGGACAGTACAGGACAGGACAGCTGTGCAGCTGATAATAAGACTTCCAGATGAAGAGCCGAGACCAGCAGTGGACCTGATCTCAGCAGATCACAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47519 lncRNA upstream 1251 8467145 ~ 8472989 (+) False LOC103037241
TU47516 lncRNA upstream 35376 8386173 ~ 8438864 (+) False fasn
TU47525 lncRNA upstream 65630 8407480 ~ 8408610 (+) True G35300
TU47524 lncRNA upstream 66847 8406851 ~ 8407393 (+) True G35299
TU47458 lncRNA upstream 365770 8108160 ~ 8108470 (+) True G35244
TU47610 lncRNA downstream 61189 8552410 ~ 8552834 (+) True G35359
TU47612 lncRNA downstream 66015 8557236 ~ 8560349 (+) True G35361
TU47615 lncRNA downstream 69140 8560361 ~ 8561652 (+) False G35362
TU47613 lncRNA downstream 69459 8560680 ~ 8562672 (+) True G35362
TU47614 lncRNA downstream 70682 8561903 ~ 8562959 (+) False G35362
XM_022669053.1 mRNA upstream 1278 8442132 ~ 8472962 (+) True LOC103037241
XM_022669052.1 mRNA upstream 35375 8404717 ~ 8438865 (+) True fasn
XM_022669049.1 mRNA upstream 72597 8361499 ~ 8401643 (+) False ccdc57
XM_022669058.1 mRNA downstream 107961 8599182 ~ 8703597 (+) True pald1
XM_022669059.1 mRNA downstream 120464 8611685 ~ 8703597 (+) False pald1
XM_022669060.1 mRNA downstream 130659 8621880 ~ 8703597 (+) False pald1
XM_022669062.1 mRNA downstream 228133 8719354 ~ 8851392 (+) True LOC103024481
XM_007235442.2 mRNA downstream 503222 8994443 ~ 9029155 (+) True LOC103023541
TU47135 other upstream 1570243 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 1742816 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 1810653 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 1812989 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 4296157 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 1982153 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 1982153 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 2503140 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 2503140 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 3310237 11801458 ~ 11802204 (+) True G35903

Expression Profile