RNA id: TU47534


Basic Information

Item Value
RNA id TU47534
length 1874
lncRNA type inter_gene
GC content 0.48
exon number 8
gene id G35306
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8294830 ~ 8376030 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTAAAATATGCAGTGATATCAAACACTGCTGTGACAAATTCTGGCACAtttgttataattattataaagtgcaataaaaaaaaaagagcattcTTGCATTTCAAAACATTATATACATGACAAGGCATATTTAGACACAGTCAGATGTTAGGTTTCCTTCATTTATTTTCGTTTATTAAGGGTTTTCCTAAATGCTGAAGCCTTTAGACAGGCCTTGTGCGTGTGCCAGGGCCTTCTGTGGGCTTTTCAGGAGCAGGGCTAGCCTGTACCTGTGACGTGGACATGCGGGAGGTGTCTTGTCGGCCGGTCAGGTCAGAAGAGGACACATTAACTGGGGCCCCGCGGTGAAGCCGCATGCTGACTTTCCGCTCCCTCTCCATGCCGGTTACAGGTCGCGGTGAGGATGTGTTTctgtgtgtgAGGTTGGAGTAAGGGGCGTTGGGGGTGCACCATCCTGTGTGGCTCGGGGTCTGCCTGAGGCTGATGGAATGCCTCTAGGGGCTGGATTCCTGCTGTGCCTCAACCTTTCCTCCcggtctctcctctctctttcagcCTCCTCTGCTGCACGGTTAGCACCAAACTTAAGCATGTTCCAATCAAACACATAGTCGTATGAGAAACCCTGTCTGTGGAACAGATTCCTGAAGAGCTGCCTCAGGTACGAGTAGTCAGGCTTGTCATCAAATCGCAGTGAGCGGCAGAAGTTGAGGTATGTGGCAAATTCAGATGGGTAGCCCTTGCAAAGAACTTCAATAGGAGTAGACATTTTCTTCTCGCTGATGCGTTCGTATTTTTGTCTCTTGGTGGCAGCTTTCAGACCCTGCCATGGCAGTGAGCCCAGGTTAAAATACATTAGCACATAGCCCAAAGACTCCAGGTCGTCACGCCGGGACTGCtCTATGCCCAGGTGAGTGTTGATAGAGGCATAGCGAGCAGTGCCAGTCAGGTTTTTGTTCTCTCTATACGGAATGTGCTGGTGGGTGCGGGCATCACGGTACTTCTTGGCCAAACCAAAGTCAATGATATAGACTAGGTTGCCCTTCTTCCCCAGCCCCATTAAGAAGTTGTCAGGCTTCACGTCTCTGTGGATGAAGTTCTTGGAGTGGATGTACTCTATACGGCTGATCATCTGGTCAGCTAACAGTAAAACAGTCTTAAGGCTGAATTTCCTCGAGCAGAAGTTGAAGAGGTCTTCCAGACTGGGTCCCAGAAGCTCCATCACCATCACATTGTAGTCCCCCTCTGCACCACACCACTTTATTGTTGGGATAccaaCTCCTCCCTGCATCATCTTGTAGATCTTGCTTTCTATGTGAAGCTGAGGATGCTTCGTCTTCACACATTCCAGCTTAATGGCGACTTCCTCCCCAACAGAAATGTCCGTGCCCAAATAGATGTCACCAAAAGATCCACTTCCAATTTTCCTGCCCAGTCTGTATCTGTTTCCCACTCGGAGCTCCATTTCTCTGATGACACCTAGCTATCCACTAGCTAGCAGCTATGTACAGCTTTTTCAATTACCCAGAAATTAACTTAACgctcaaatttaaaaacctGTACCCTAACGAAACAAAACCACTCAGCCTAACCAGAAGCTTTCTACGATCTTTCAGACCCTACGCTACTCCAACCCCCCCGAATCCCTGAGGAAAATTCGGATCCTTCCGGCGCAGTTCAGATTTCACCATTCCTTTTCTAATGTATCCGTGACTAAAACACCACAATATTAGGCTTAAAATAAAGCGCAGAGTCTGTATATTATGCTCCTATAGGTTTAATGAACATTTTGTCCCGTTTTCATGAAGATGGGAGTGGATTTTCTGGCTCGACCCCCTCTCTCCGATCCTGATCCCCAGCTGTCATAGGCCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47544 lncRNA downstream 11336 8319220 ~ 8336288 (-) True G35310
TU47480 lncRNA downstream 295971 8049542 ~ 8051653 (-) True G35266
TU47409 lncRNA downstream 943088 7403169 ~ 7404536 (-) True G35203
TU47579 lncRNA upstream 65790 8423951 ~ 8426173 (-) False G35337
TU47584 lncRNA upstream 65790 8423951 ~ 8438912 (-) True G35337
TU47585 lncRNA upstream 78737 8436898 ~ 8441273 (-) False G35337
TU47590 lncRNA upstream 109023 8467184 ~ 8481734 (-) True G35341
TU47591 lncRNA upstream 109483 8467644 ~ 8472958 (-) False G35341
XM_022669046.1 mRNA downstream 9003 8321249 ~ 8338621 (-) False LOC103037651
XM_022669045.1 mRNA downstream 9005 8321249 ~ 8338619 (-) True LOC103037651
XM_022669044.1 mRNA downstream 22596 8321249 ~ 8325028 (-) False LOC103037651
XM_022669412.1 mRNA downstream 997165 7348746 ~ 7350459 (-) True LOC111192401
XM_007259340.3 mRNA downstream 1076025 7267937 ~ 7271599 (-) True LOC103039244
XM_007259645.3 mRNA upstream 4822 8362983 ~ 8375681 (-) True LOC103029555
XM_007259646.3 mRNA upstream 4822 8362983 ~ 8370779 (-) False LOC103029555
XM_022669051.1 mRNA upstream 4822 8362983 ~ 8368363 (-) False LOC103029555
XM_022669414.1 mRNA upstream 174596 8532757 ~ 8533497 (-) True LOC111192402
XM_022669056.1 mRNA upstream 204862 8563023 ~ 8587186 (-) False lrrc20
TU47076 other downstream 1694039 6619680 ~ 6653585 (-) True G34981
TU47043 other downstream 1806260 6537021 ~ 6541364 (-) True G34953
TU47031 other downstream 1833923 6465368 ~ 6513701 (-) False LOC103026268
TU46775 other downstream 2408224 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 2419470 5907974 ~ 5928154 (-) False ccdc186
TU47717 other upstream 566667 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 846409 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 1067914 9426075 ~ 9431164 (-) False rpl38
TU47867 other upstream 1068675 9426836 ~ 9431164 (-) False rpl38
TU47869 other upstream 1068675 9426836 ~ 9431228 (-) True rpl38

Expression Profile