RNA id: TU47584


Basic Information

Item Value
RNA id TU47584
length 1999
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G35337
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8423951 ~ 8441273 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTACAACCAaggacagaaaaaagaaaagatcacACCAAGACTCTATACTATGTTAGTGATAGTTCTTTATTTGGACTAGAACAATAAATACTTGAAaaattacacaaacacaaaacaaatgacaaaatgaACTGAATATTAACAGCTAACAAAGAAATAGCCACGTAGTGCATCTACGCACCAAGCACAACATCCAAACAGGCATCTGGTTCGTCATAGACTTGAACAGAAGTCTCAGATCTCTCCACAGAGCTGCTCTCGGAGAGTTGCCTTTCTTCTTCATTGTGACTGGAAGAGGGGAAACCATCAGGGCTCAACTGTACGACCGGCAACACAACAGTCGATAcagaataaaatgagaaaagttATTTTCACTTATTAACTTGCAGTTACACAAAAAAGCACAGGAGCAGCATTAATTTCAAGGCATTCCACATAAACATCATGACAGAgcttttcttttgctttctttttttagcaAACACTTAAATTGGGAAAttgtttaaattagtttaaatcaTTAATTCATCTATTCATTCTTTAAGTGAATTCTGCCTGATcttggctgtgggttcactagaACAGAATATCCAGATTTTTCACAGAGATTCACAAACTCTTGCAGCATTTTTGCAGGACATTAACAGCAATATTAGGATTACAGTAAACAAAGGTATGGAATAAGGAAGGTGTTACTACTGGTAATGTTGGTGGAATATCGAATGTGTCTGGAAACATGTAATCATTGGTAAACAGTCAACATGTGACTTGTTGCACAGTGAAAGGACTGAAGTGAAGCCGAACCAGAGCAGATATGGACATTTTACTGTCCGTTTCATAAGGATTAATAAGCCTTATTAACGTGCACACGCGGAAATGCGGGCTTATGTGGAATGCACCCATTTTAGTAGAATGATGAATGCCGTTGACATCATAATATTTTGAATTATGTGGCACATTTCATGTTATCTTAGTCAAAATTCTGCTCATATTTTGAGCAACTACAGTAAAGgaacacacaaaataaacagaatgaggAATTTAGAAGAACATGTTGGAGAGATTTTTGCTCTCAGCAGAATAAATATGCTGTGCCACATATATTTTGGAATGAGTAAAAGAAGGTAAGAAGAGTGTAAGATGTGGAGACAGGTGTACTACTGTGTTAGGAGACAGATACGTCGGGGCTTCATTTGTGCAGGTTAAGTAAGGGCTAGGGCAGACTGTGTTCTGGTGTTTTTgaggaaaaaaatgtgaataaggGAAAATCAAGAAGGAGgaagaccaaaaaaaaaaaatctaaatgatAATGATATTAAATGAACTAACCGAATGCGGTTGCCTCCAGGTTCCTGTCTGAGACAGTTGACCATTCCCACCACTCCATTATGGCTGTTAGTAGCAGTAATCCACACTGGTTTCTCTGATGCCTCAGCAAGTATGCTCTTCAGATTCTCCACCCATTTGTAGTCAGTAGAGTCCACGGACAATGCGATAGGCTGTTTTTCAGCAGTCTGTCTACGTCCAAGGAAGAGAACTGAGCCGTAGAATGACTTCTTCATCATGAGCACTTTGAGAGAGGCCTTCTCAAACAGCTTCTCCCATTCcacCTGAGTCAGCAGTCCATTCTGATTGTCCAAAGAGTTGAGGAAGGCCACAGTCTCCCCCAGTGTGTCCCCTCTCAACAGGGTGTGAAGTAGCACAAAGCCCCCCTCCTTAGCAGATGAGGCCAGGTTTTCCAGCAGTGTGGCTGGGCTTGCCACAACCCCTGGAGCACAGTTGCACACCACCAGGTCAGCACCAGTCAGATTTCCTGAAGCTGGACCCTGCTGAGGATCCCACTGTGCAGCGGAGATGCCCTGCTCTTCCAGAGAGCTCTGCTGGGCTGCTAGCAGCTCTGTGTTGAGGTCAGACGCTGTGTAGTCCAGGCGCAACATTGGCTGAATGTTGAGGAGGCTGACGGCTCGGGAGAACACACGGCCTTCGCTGGAGAGAGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47533 lncRNA downstream 47921 8347624 ~ 8376030 (-) True G35306
TU47535 lncRNA downstream 63714 8294830 ~ 8360237 (-) False G35306
TU47537 lncRNA downstream 63714 8304304 ~ 8360237 (-) False G35306
TU47534 lncRNA downstream 65790 8347624 ~ 8358161 (-) False G35306
TU47544 lncRNA downstream 87663 8319220 ~ 8336288 (-) True G35310
TU47590 lncRNA upstream 28272 8467184 ~ 8481734 (-) True G35341
TU47591 lncRNA upstream 28732 8467644 ~ 8472958 (-) False G35341
TU47622 lncRNA upstream 113503 8552415 ~ 8554828 (-) True G35369
TU47625 lncRNA upstream 115992 8554904 ~ 8556983 (-) True G35371
TU47621 lncRNA upstream 121990 8560902 ~ 8562824 (-) True G35368
XM_007259645.3 mRNA downstream 48270 8362983 ~ 8375681 (-) True LOC103029555
XM_007259646.3 mRNA downstream 53172 8362983 ~ 8370779 (-) False LOC103029555
XM_022669051.1 mRNA downstream 55588 8362983 ~ 8368363 (-) False LOC103029555
XM_022669046.1 mRNA downstream 85330 8321249 ~ 8338621 (-) False LOC103037651
XM_022669045.1 mRNA downstream 85332 8321249 ~ 8338619 (-) True LOC103037651
XM_022669414.1 mRNA upstream 93845 8532757 ~ 8533497 (-) True LOC111192402
XM_022669056.1 mRNA upstream 124111 8563023 ~ 8587186 (-) False lrrc20
XM_022669054.1 mRNA upstream 124111 8563023 ~ 8587186 (-) False lrrc20
XM_022669055.1 mRNA upstream 124111 8563023 ~ 8587186 (-) True lrrc20
XM_007242927.3 mRNA upstream 154664 8593576 ~ 8597809 (-) True nodal
TU47076 other downstream 1770366 6619680 ~ 6653585 (-) True G34981
TU47043 other downstream 1882587 6537021 ~ 6541364 (-) True G34953
TU47031 other downstream 1910250 6465368 ~ 6513701 (-) False LOC103026268
TU46775 other downstream 2484551 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 2495797 5907974 ~ 5928154 (-) False ccdc186
TU47717 other upstream 485916 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 765658 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 987163 9426075 ~ 9431164 (-) False rpl38
TU47867 other upstream 987924 9426836 ~ 9431164 (-) False rpl38
TU47869 other upstream 987924 9426836 ~ 9431228 (-) True rpl38

Expression Profile