RNA id: TU47610


Basic Information

Item Value
RNA id TU47610
length 425
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G35359
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8552410 ~ 8552834 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTCACAAAGAGGCAGATGAGTGATTGTTCAGTGCATTCGATAAACAGCAGCACAATAAGgagaaaagagagcgagagagagagtgaaaaattAGAGCGATGGTGAAacgtctatctctctctccaaccAGAGTCTCTTGACCTTGTCTGTGAAatatttctccttctttcaATAAATATGAACAGTATATTCACACAGCAGCATTTACTCCTTTCTTTAAAAAGTGATAGTTCAATGAGAAGTCTGTTCTGGAAATCTTTACTTAAATATTGCTCATATTTAGAGGGTCTGGTGTCTTAGGCAAGTTTGTTtctttagcactggagctacgatGCTAATGTGGCTAAGAACTAATAGAAATAATAGGGATGTGAACAAAAGACTTCAGGAAGGAACTTTTAGTCCATGCTAACAGACAGCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47529 lncRNA upstream 61184 8479879 ~ 8491226 (+) False LOC111192363
XR_002649866.1 lncRNA upstream 61189 8474240 ~ 8491221 (+) True LOC111192363
XR_002649865.1 lncRNA upstream 61189 8479522 ~ 8491221 (+) False LOC111192363
TU47519 lncRNA upstream 79421 8467145 ~ 8472989 (+) False LOC103037241
TU47516 lncRNA upstream 113546 8386173 ~ 8438864 (+) False fasn
TU47612 lncRNA downstream 4402 8557236 ~ 8560349 (+) True G35361
TU47615 lncRNA downstream 7527 8560361 ~ 8561652 (+) False G35362
TU47613 lncRNA downstream 7846 8560680 ~ 8562672 (+) True G35362
TU47614 lncRNA downstream 9069 8561903 ~ 8562959 (+) False G35362
TU47647 lncRNA downstream 238288 8791122 ~ 8851350 (+) False LOC103024481
XM_007259650.3 mRNA upstream 64959 8482871 ~ 8487451 (+) True LOC103030936
XM_022669053.1 mRNA upstream 79448 8442132 ~ 8472962 (+) True LOC103037241
XM_022669052.1 mRNA upstream 113545 8404717 ~ 8438865 (+) True fasn
XM_022669048.1 mRNA upstream 150767 8378485 ~ 8401643 (+) False ccdc57
XM_022669058.1 mRNA downstream 46348 8599182 ~ 8703597 (+) True pald1
XM_022669059.1 mRNA downstream 58851 8611685 ~ 8703597 (+) False pald1
XM_022669060.1 mRNA downstream 69046 8621880 ~ 8703597 (+) False pald1
XM_022669062.1 mRNA downstream 166520 8719354 ~ 8851392 (+) True LOC103024481
XM_007235442.2 mRNA downstream 441609 8994443 ~ 9029155 (+) True LOC103023541
TU47135 other upstream 1648413 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 1820986 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 1888823 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 1891159 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 4374327 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 1920540 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 1920540 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 2441527 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 2441527 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 3248624 11801458 ~ 11802204 (+) True G35903

Expression Profile