RNA id: TU47622



Basic Information


Item Value
RNA id TU47622
length 2414
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G35369
representative True

Chromosome Information


Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8552415 ~ 8554828 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GTCCTCTGAGGAATTTACAGGCAGAACTACATactttttcactgaactccgcGGTCTGAACACATATTTAAGTTTTGTCACTTCGTGTTTactaaaatagctatttgtttaCTGctatgcaccgtaattacactttgaatGCTCGTTACCACGGAGATCcaagtaaacacaacagcgtggaaatggaggagctactgaacgtgatgtcatgtgattgagaaagcctaaaaactcactgttcctcctgttttttaaattgcagtccggatgcaagagttttatcactaagcagaagtgtgaaatacagtgtttttcacagacgtccccctaagAAAgaaatcccgtccggatagggcttatgatgtattcctggtacacatatGACACTACATTGCCATAAGCTTGCCTGCCAGTGTTCGGCCCcaatcacaagataacacctgacAACTTATATAGGTTTGGGTGTCCCCAAGCCAAGTTACCCCTAAGGTGATGGACAGtttatgatcagtttacatactggtAAGGTCACATGACTTTTGGTATGTCAGTGCATGTtgtgataaatataaatatctcaAGATCTGGAGAAAATAATTCAAATTTAATTCATTATCACAGAAATTTGAGTTCATACAATCTGCAATCCGTGTCCCGAGGCTTTTGTACACATGCTATGCTAAATGTACATTataaaaatgcacacacacacacacacactctggatCTGTCAATGAACTGAAAGAAAATCTTTGCTGTCTACCAGCAACAGGGCAGTGGAACCATAAGCCATTGTTGTGACAGGCGAGCTGAGTAAGCTGTTTCAGACACACTGATTTCTTTAGCAGAGGCTAACAGGATAATAAAAGCCTGTCAGCAGGCCAGACTGATCGACAGTGAGTTAGACAGAGTTCTAACTTCTTTCATTAGGTCTCGATAAGACCTCGCAACTTACACAGGTGTTCTAGTATGCCACACGGAAGGCAGTGCTGTTATTCACTATTTACCATCTGCTACAATTAGCTTGGAGTGAAGGTGTTTAGTAATCTCTAATAGACTtccttattatattatataacattcatgtacagctctggaaaaaacttaatataactccatataatcaagaggaggatggatgatcacaagccatcaacccaagctgaactgcttgaatttttgcaacaggagtggcattaactaatccaaaaacagtgtgtaagactggtggaggagaacatgccaaggtgcatgaaaactgaaattgttccaccaaacattgatttctgaactctttatgaatatcaacttgttttctttgaatcatttgttatttcggccatttctcattttctgcaaataaatgctttaaatgacaatatttttatttggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttggggcgctgagtggtccagcggtctaaagcgctgccactatgagcacaGGAATATGAGCActaggtcgcaggttcgaacccccgctcatgcagctttgccatcaagctgccggcgctcagaggaagcacaattggccctgctccctccgggtgggtagatggcacttttTCCACttatcactcctatggtgatgtctgcagaacagggcgtctgtgagctgttgtatcagaaccgatccgctgcgctttcctccaagcgcactggctgctcggcaatgctgtatcagcagcagcagcttgaaaagaagtaatagctggcttcacatgtatcggaggaggcatgtgttagtagtcttcaccctcctggtgtgttggggattatttgagtgggttgggtaatttggccgtgtaaattggggagaaaatgggataaaatttgaaataaaattatttaaaacaacaatattcattttactcaaacatatacctataaatagcaaaatcagagaaactgtttcagaaactgaaatgtttttttccagagctgttacAACACTGCTGTCTGTTAGCATGGACTAAAAGTTCCTTCCTGAAGTCTTTTGTTCACATCCCTATTATTTCTATTAGTTCTTAGCCACATTAGCatcgtagctccagtgctaaagaAACAAACTTGCCTAAGACACCAGACCCTCTAAATATGAGCAATATTTAAGTAAAGATTTCCAGAACAGACTTCTCATTGAACTATCACTTTTTAAAGAAAGGAGTAAATGCTGCTGTGTGAATATACTGTTCATATTTATtgaaagaaggagaaatatTTCACAGACAAGGTCAAGAGACTCTggttggagagagagatagacgtTTCACCATCGCTCTaatttttcactctctctctcgctctcttttctcCTTATTGTGCTGCTGTTTATCGAATGCACTGAACAATCACTCATCTGCCTCTTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU47590 lncRNA downstream 70681 8467184 ~ 8481734 (-) True G35341
TU47591 lncRNA downstream 79457 8467644 ~ 8472958 (-) False G35341
TU47585 lncRNA downstream 111142 8436898 ~ 8441273 (-) False G35337
TU47584 lncRNA downstream 113503 8423951 ~ 8438912 (-) True G35337
TU47579 lncRNA downstream 126242 8423951 ~ 8426173 (-) False G35337
TU47625 lncRNA upstream 76 8554904 ~ 8556983 (-) True G35371
TU47621 lncRNA upstream 6074 8560902 ~ 8562824 (-) True G35368
TU47687 lncRNA upstream 146779 8701607 ~ 8703531 (-) True G35408
TU47691 lncRNA upstream 157987 8712815 ~ 8713030 (-) True G35411
TU47702 lncRNA upstream 263580 8818408 ~ 8865303 (-) True LOC111192365
XM_022669414.1 mRNA downstream 18918 8532757 ~ 8533497 (-) True LOC111192402
XM_007259645.3 mRNA downstream 176734 8362983 ~ 8375681 (-) True LOC103029555
XM_007259646.3 mRNA downstream 181636 8362983 ~ 8370779 (-) False LOC103029555
XM_022669051.1 mRNA downstream 184052 8362983 ~ 8368363 (-) False LOC103029555
XM_022669046.1 mRNA downstream 213794 8321249 ~ 8338621 (-) False LOC103037651
XM_022669056.1 mRNA upstream 8195 8563023 ~ 8587186 (-) False lrrc20
XM_022669054.1 mRNA upstream 8195 8563023 ~ 8587186 (-) False lrrc20
XM_022669055.1 mRNA upstream 8195 8563023 ~ 8587186 (-) True lrrc20
XM_007242927.3 mRNA upstream 38748 8593576 ~ 8597809 (-) True nodal
XM_022669068.1 mRNA upstream 312648 8867476 ~ 8887318 (-) True LOC103024169
TU47076 other downstream 1898830 6619680 ~ 6653585 (-) True G34981
TU47043 other downstream 2011051 6537021 ~ 6541364 (-) True G34953
TU47031 other downstream 2038714 6465368 ~ 6513701 (-) False LOC103026268
TU46775 other downstream 2613015 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 2624261 5907974 ~ 5928154 (-) False ccdc186
TU47717 other upstream 370000 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 649742 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 871247 9426075 ~ 9431164 (-) False rpl38
TU47867 other upstream 872008 9426836 ~ 9431164 (-) False rpl38
TU47869 other upstream 872008 9426836 ~ 9431228 (-) True rpl38

Expression Profile