RNA id: TU47625


Basic Information

Item Value
RNA id TU47625
length 2080
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G35371
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8554904 ~ 8556983 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCCCTTAGGCATTTTGATATGGTCCAATCTAGccgctttaaaaaaaaaaaaaaagtttggagacCCCAACAATATCATTGATAGCGGCTCCACCATACAACTTAGGCTGGAGATaaaccaaaagtcatgggacaacatTATGTAATTTGCTGCTTTTACGAAGTGCTCCTTAAAGTCTGTGgtgtttgtttaatgtttgtttaatcAGTCACAGGCTTAATTGCGTCATAACATCATCCACATAGTTCGTCTATCCACCATGTCCTTGGCATAGCGATCGAAGTAAAACGTTCGTGCGAAATCTGTGGTCGCATGTTTTCTCCACAGCTATGCCACATTGTTAGCCGAAGCCAGGCAAACATAGTCTCGGCAAGACGTATGTCAAGACCTTAAATCCTGCTAGAATATACAGCTGCATATCGGCAGGTGTCATAGAATTCTCATCAATGACTCATCCGTGTTTCCTCTAAAGAGGCTACACTATGAGTGGCGACACCACCCAAAGGCACGCTTCTCTGAATGGAGGTCTTGATCTGTTTGAGTGATGAATCAATATCATGTTGGCAGTAAGCAGTGTGTAGATGCACGCTGAATCTCAGGGTCAGGTGTTGTATATGAGCTATAAACAGACTACACTCACAGAATACAGCACAGGAATGCGTGAGGTAAACAGTTCTGCTATAAAGGATGTACACCAGTAAAgcttaacacatttttattgcCACTTTTTTGTCTCTTCAGCATATAGAAATTGCTTCAGCTCTGATCATTTAGGAGCATTTTGTTGTTCTGTAACTACAGACTGTAGTGCTTCTGTTATTCTAcatactttatttctttatttatcttcctttcactctgttcttcaatagAGAGGGTCCCTTGAGACCACCACAGATCACCTTTTATTATTGGGAGTtggatcattctcagcactgctatGATGGTGGTGTGATATTGTGCCGGTATGAGTGGATCAAAcacagaagtgctgctggagtttttaaacactgtgttaatTTATTGCtttccactctattacacacttctATCTACAGTAGCTGCTCCacccagagttgccaggtttacGTTTTTTCCGCCAACCTGGGTTTGTTTGAAAATCTAGTagcaggttaaaaaaaaaaattcaggggTGGCAGGGTGCATTTTATTGTGCAACTTTTAGAAATTACAGAGGCcgccagaaaaacaaaaaagtgggtaTTGTCTTGGATTTTATGTCCTTGGAAGATTGATTACAACAAGAAGAAGCAACAGAACATAATaacataagagagagagatcacaatgtaaccagaaatAACCACTacgaaaaaaaatgttaaagaggaaagaagagagttcaggaggggcaagaacagatttttttttttgctaattatgtaaCTATTACATGttcttgactgggatataaaactgttataaaagaacaaataaaacactaatgctaaaatgttattaatgactttaagatatatagcaatactgataatacaTCCCTTATAAACAATATTGTATACTAAGTCGTACAATATACCAAGTCgacatatattttgggctagtttaagcttctgaagggcgtGTTTTAGACCGACTTTggccaggattttttttttgttggacctggcaaccctggatCCACCTTGTATAGATGTAGTAAAGTCAGAGAcgaaagctctgtatctgttgctgcacagtttgtgttgctCATCCTGctgtccttcatcagtggtcacaggatgctgcccacaggacactcaTTCCAGCAGTGACTTGACACCTGATGAGGTGTTAAAAActctggtggtcctgtggggtcttgaccattgaagaacaggatgaaaggaggataatcAGAAGAATGCAAAGAatcagatacaggactacaatctgtaattatagaactacaaaatgtTCTTTATGATCAGTAGATCTGACAGATCTATGTGTTGGGATGTTATACTTAATTGGTGTATACACAATGTGGATGTGGATGTGGAGTcagtcatgatcattatcacctactgcactgtccactgtgggtggtaatgcctacTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47622 lncRNA downstream 76 8552415 ~ 8554828 (-) True G35369
TU47590 lncRNA downstream 73170 8467184 ~ 8481734 (-) True G35341
TU47591 lncRNA downstream 81946 8467644 ~ 8472958 (-) False G35341
TU47585 lncRNA downstream 113631 8436898 ~ 8441273 (-) False G35337
TU47584 lncRNA downstream 115992 8423951 ~ 8438912 (-) True G35337
TU47621 lncRNA upstream 3919 8560902 ~ 8562824 (-) True G35368
TU47687 lncRNA upstream 144624 8701607 ~ 8703531 (-) True G35408
TU47691 lncRNA upstream 155832 8712815 ~ 8713030 (-) True G35411
TU47702 lncRNA upstream 261425 8818408 ~ 8865303 (-) True LOC111192365
XR_002649867.1 lncRNA upstream 268926 8825909 ~ 8865293 (-) False LOC111192365
XM_022669414.1 mRNA downstream 21407 8532757 ~ 8533497 (-) True LOC111192402
XM_007259645.3 mRNA downstream 179223 8362983 ~ 8375681 (-) True LOC103029555
XM_007259646.3 mRNA downstream 184125 8362983 ~ 8370779 (-) False LOC103029555
XM_022669051.1 mRNA downstream 186541 8362983 ~ 8368363 (-) False LOC103029555
XM_022669044.1 mRNA downstream 229876 8321249 ~ 8325028 (-) False LOC103037651
XM_022669056.1 mRNA upstream 6040 8563023 ~ 8587186 (-) False lrrc20
XM_022669054.1 mRNA upstream 6040 8563023 ~ 8587186 (-) False lrrc20
XM_022669055.1 mRNA upstream 6040 8563023 ~ 8587186 (-) True lrrc20
XM_007242927.3 mRNA upstream 36593 8593576 ~ 8597809 (-) True nodal
XM_022669068.1 mRNA upstream 310493 8867476 ~ 8887318 (-) True LOC103024169
TU47076 other downstream 1901319 6619680 ~ 6653585 (-) True G34981
TU47043 other downstream 2013540 6537021 ~ 6541364 (-) True G34953
TU47031 other downstream 2041203 6465368 ~ 6513701 (-) False LOC103026268
TU46775 other downstream 2615504 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 2626750 5907974 ~ 5928154 (-) False ccdc186
TU47717 other upstream 367845 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 647587 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 869092 9426075 ~ 9431164 (-) False rpl38
TU47867 other upstream 869853 9426836 ~ 9431164 (-) False rpl38
TU47869 other upstream 869853 9426836 ~ 9431228 (-) True rpl38

Expression Profile