RNA id: TU47667


Basic Information

Item Value
RNA id TU47667
length 267
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G35400
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8901185 ~ 8901451 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atctgtgtgatttaataaataattttattttacaaaacctgtcatttcagtgtgtttttctggataacttggttatgaaaatttctgtcacctgtagaaaccacaccctgagatgtcttgtgttattaattaatttgattaattaattaattaattaattaattaattaattaatctaattaaattaatttaataactggcgcccaattaaaaaatatttcaacatctcaattagcaccaggtattaaaccactgagccgCTACACT

Function

GO:

id name namespace
GO:0048736 appendage development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0033333 fin development biological_process
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47647 lncRNA upstream 49835 8791122 ~ 8851350 (+) False LOC103024481
TU47649 lncRNA upstream 50002 8791122 ~ 8851183 (+) False LOC103024481
TU47614 lncRNA upstream 338226 8561903 ~ 8562959 (+) False G35362
TU47613 lncRNA upstream 338513 8560680 ~ 8562672 (+) True G35362
TU47615 lncRNA upstream 339533 8560361 ~ 8561652 (+) False G35362
TU47751 lncRNA downstream 128017 9029468 ~ 9030561 (+) False G35454
TU47753 lncRNA downstream 128017 9029468 ~ 9033192 (+) True G35454
TU47787 lncRNA downstream 244920 9146371 ~ 9148165 (+) True G35479
TU47807 lncRNA downstream 308354 9209805 ~ 9210197 (+) True G35495
TU47847 lncRNA downstream 470119 9371570 ~ 9406210 (+) True G35533
XM_022669062.1 mRNA upstream 49793 8719354 ~ 8851392 (+) True LOC103024481
XM_022669058.1 mRNA upstream 197588 8599182 ~ 8703597 (+) True pald1
XM_022669059.1 mRNA upstream 197588 8611685 ~ 8703597 (+) False pald1
XM_022669060.1 mRNA upstream 197588 8621880 ~ 8703597 (+) False pald1
XM_007259650.3 mRNA upstream 413734 8482871 ~ 8487451 (+) True LOC103030936
XM_007235442.2 mRNA downstream 92992 8994443 ~ 9029155 (+) True LOC103023541
XM_022669065.1 mRNA downstream 275787 9177238 ~ 9207684 (+) True LOC103022911
XM_022669063.1 mRNA downstream 275822 9177273 ~ 9207684 (+) False LOC103022911
XM_022669064.1 mRNA downstream 283848 9185299 ~ 9207684 (+) False LOC103022911
XM_022669066.1 mRNA downstream 319280 9220731 ~ 9267596 (+) True LOC103043335
TU47135 other upstream 1997188 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 2169761 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 2237598 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 2239934 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 4723102 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 1571923 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 1571923 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 2092910 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 2092910 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 2900007 11801458 ~ 11802204 (+) True G35903

Expression Profile