RNA id: TU47717


Basic Information

Item Value
RNA id TU47717
length 1243
RNA type TUCP
GC content 0.41
exon number 6
gene id G35429
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8924828 ~ 8927717 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttcagctgtttttatttaaactatttcTGGGGTTTAGAGCTTCAGCAGCAGTTTGGTTTACCTGAGCGGAAAACTACCGAGCACTGAGCGGATTATTCCTCTATACTGACTGTTTATTATCTGTACTGTGTTTTAATTAtcctgtaattgttttattacCTGTTTTGTTCTGTGTTGATTGTTTTTTTCAGGTTACCGGACCCGCTGTGGGTAGCGGCACCCCGCGCTCCGACATGGACTGGAGGAAGATCTTCAGAGTTCGTCCCCGCGAGGTTGTGGAGAGCGACTGGCGGAAGAAGATTTTCCGACTTGATCCACTCCAGGCTACCACACCCGTTGTGGTGATCGACATCCTGCAGAAGAATTTTGGAGTCTGTCCACTCGAGGCCCAGGAACCATCGATGGCAGACCTGACCACCACCTCCTTCCCAGAGCCATCCCAGCAGGAGGACCCTGGACTGCCCCCACCACCATCCACCAGCACCCAGGGCAGATCAGTGAAACGCCTCAGCACCACCATTAACACCATCTTTAGTCCTCTGTGTTTCAGATCACGCCGCAGAGTCCATCCAGACCCTCGTCACAGGCTGGACCTTCAGGGGACACTGCCTGAACCGGAGCCAGTGCCTGCTGCACAGAGAGGACGACTGCAGCGCTTCCTGCCTTTCCTTAGGAGGATGGTGAGGAGGTGAAGAGGTGGCCTGTCCATCATCTGGAAGCTGGGCTTTTtcattagacagacagacagacagatagatagaagacAAACCTAaaaaagaaaaaatagatagatagatagatagagatcaaaagaagacaaacaagaaaaagtagatagatagaagacaAACATAAgaaagtagatagatagatcaaaagaagacaaacaaaaaagaataaatagatagaaagatagatagatagatagatagatagatagaagacaAACATAAAAAGTAGATAGATATCAAAAGAagacaaacataaaaataaaaagttgatagatcaataaaagacaaaaaagaaaaagtaaagagatagatagatagaagacaaacataagaaaaaatagatagatcaataaaagacaaacaaaaaagaaaaagtagatagagagatatatagatagataggtaaaaaaagaaaagaaaacgtagatagatataaaaagagaaacaaaaagtaaaagatagatagatagaaaaagagaaacataaaaagtatagatagatagatataaa

Function

GO: NA

KEGG:

id description
ko04320 Dorso-ventral axis formation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47710 lncRNA downstream 25281 8899087 ~ 8899547 (-) True G35427
TU47702 lncRNA downstream 59525 8818408 ~ 8865303 (-) True LOC111192365
XR_002649867.1 lncRNA downstream 59535 8825909 ~ 8865293 (-) False LOC111192365
TU47691 lncRNA downstream 211798 8712815 ~ 8713030 (-) True G35411
TU47687 lncRNA downstream 221297 8701607 ~ 8703531 (-) True G35408
TU47737 lncRNA upstream 11216 8938933 ~ 9003896 (-) True tbata
TU47811 lncRNA upstream 207772 9135489 ~ 9136197 (-) True G35499
TU47813 lncRNA upstream 211368 9139085 ~ 9139983 (-) True G35501
TU47836 lncRNA upstream 345995 9273712 ~ 9274092 (-) True G35524
TU47851 lncRNA upstream 382462 9310179 ~ 9313609 (-) False G35536
XM_022669068.1 mRNA downstream 37510 8867476 ~ 8887318 (-) True LOC103024169
XM_007242927.3 mRNA downstream 327019 8593576 ~ 8597809 (-) True nodal
XM_022669056.1 mRNA downstream 337642 8563023 ~ 8587186 (-) False lrrc20
XM_022669054.1 mRNA downstream 337642 8563023 ~ 8587186 (-) False lrrc20
XM_022669055.1 mRNA downstream 337642 8563023 ~ 8587186 (-) True lrrc20
XM_022669067.1 mRNA upstream 12935 8940652 ~ 8988684 (-) False tbata
XM_022669061.1 mRNA upstream 125246 9052963 ~ 9120420 (-) True polr3a
XM_022669069.1 mRNA upstream 386867 9314584 ~ 9422711 (-) True LOC103043647
XM_022669070.1 mRNA upstream 386867 9314584 ~ 9422710 (-) False LOC103043647
XM_022669071.1 mRNA upstream 386867 9314584 ~ 9422710 (-) False LOC103043647
TU47076 other downstream 2271243 6619680 ~ 6653585 (-) True G34981
TU47043 other downstream 2383464 6537021 ~ 6541364 (-) True G34953
TU47031 other downstream 2411127 6465368 ~ 6513701 (-) False LOC103026268
TU46775 other downstream 2985428 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 2996674 5907974 ~ 5928154 (-) False ccdc186
TU47824 other upstream 276853 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 498358 9426075 ~ 9431164 (-) False rpl38
TU47867 other upstream 499119 9426836 ~ 9431164 (-) False rpl38
TU47869 other upstream 499119 9426836 ~ 9431228 (-) True rpl38
trnap-cgg_1 other upstream 525769 9453486 ~ 9453557 (-) True trnap-cgg_1

Expression Profile