RNA id: TU47751


Basic Information

Item Value
RNA id TU47751
length 370
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G35454
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 9029468 ~ 9033192 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctatactacactataataccatatattgccctatactaccctattctccctatactaccatacactgtcctatactaccctatactccctatactaccatatactgtCCTGTACTCCCTAttctccctatactacactatactaccatacactgccccatactaccctatactacactatactattatatactgtcctgtactccctatactacactatactaccataCACTGCCCGATTCTATCCTGttctccctatactacactatactatcatatactgtCATGTATACCCTATTCTCCCTATATTACACTATGCTACCATAAACtgacctatactaccctactttcactatactaaactatacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47667 lncRNA upstream 128017 8901185 ~ 8901451 (+) True G35400
TU47647 lncRNA upstream 178118 8791122 ~ 8851350 (+) False LOC103024481
TU47649 lncRNA upstream 178285 8791122 ~ 8851183 (+) False LOC103024481
TU47614 lncRNA upstream 466509 8561903 ~ 8562959 (+) False G35362
TU47613 lncRNA upstream 466796 8560680 ~ 8562672 (+) True G35362
TU47787 lncRNA downstream 115810 9146371 ~ 9148165 (+) True G35479
TU47807 lncRNA downstream 179244 9209805 ~ 9210197 (+) True G35495
TU47847 lncRNA downstream 341009 9371570 ~ 9406210 (+) True G35533
TU47859 lncRNA downstream 394414 9424975 ~ 9429378 (+) True G35539
TU47880 lncRNA downstream 423308 9453869 ~ 9454168 (+) True G35552
XM_007235442.2 mRNA upstream 313 8994443 ~ 9029155 (+) True LOC103023541
XM_022669062.1 mRNA upstream 178076 8719354 ~ 8851392 (+) True LOC103024481
XM_022669058.1 mRNA upstream 325871 8599182 ~ 8703597 (+) True pald1
XM_022669059.1 mRNA upstream 325871 8611685 ~ 8703597 (+) False pald1
XM_022669060.1 mRNA upstream 325871 8621880 ~ 8703597 (+) False pald1
XM_022669065.1 mRNA downstream 146677 9177238 ~ 9207684 (+) True LOC103022911
XM_022669063.1 mRNA downstream 146712 9177273 ~ 9207684 (+) False LOC103022911
XM_022669064.1 mRNA downstream 154738 9185299 ~ 9207684 (+) False LOC103022911
XM_022669066.1 mRNA downstream 190170 9220731 ~ 9267596 (+) True LOC103043335
XM_022669431.1 mRNA downstream 798924 9829485 ~ 10373341 (+) True LOC103040920
TU47135 other upstream 2125471 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 2298044 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 2365881 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 2368217 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 4851385 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 1442813 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 1442813 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 1963800 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 1963800 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 2770897 11801458 ~ 11802204 (+) True G35903

Expression Profile