RNA id: TU47882


Basic Information

Item Value
RNA id TU47882
length 336
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G35554
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 9454482 ~ 9454817 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtaaatactgtgttttttaaggggttttagaggagatatatattttaaaataaaaagattcacACGTGATAGGTGTCGGTGGATCTTCTAACCAATGGGGATTAAGCTCTGTCGTCATCAGGGCGGCTCTAGGCTCCCGCAGTTGGTGGGAAGCAACTGCAGCGCCTGGGTCAGACGGCTGCAGGCAGATTTCACTCGCGGGACTATAACGCCGGAAGTCATCGTCACGTGATGAAGGCGCAGACGCAAGTCGGACAAAAAAACTAACCAGCATGCACCATACCGAGCCAGGCGGCGATCGGACTGCGCAGCGCCGGGTTAAGTCGAACAAGCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47880 lncRNA upstream 314 9453869 ~ 9454168 (+) True G35552
TU47859 lncRNA upstream 25104 9424975 ~ 9429378 (+) True G35539
TU47847 lncRNA upstream 48272 9371570 ~ 9406210 (+) True G35533
TU47807 lncRNA upstream 244285 9209805 ~ 9210197 (+) True G35495
TU47787 lncRNA upstream 306317 9146371 ~ 9148165 (+) True G35479
TU47939 lncRNA downstream 251232 9706049 ~ 9706302 (+) True G35609
TU47952 lncRNA downstream 378346 9833163 ~ 9834716 (+) True G35621
TU47953 lncRNA downstream 378346 9833163 ~ 9834326 (+) False G35621
TU47954 lncRNA downstream 378346 9833163 ~ 9834521 (+) False G35621
TU47978 lncRNA downstream 504508 9959325 ~ 9959867 (+) True G35645
XM_022669066.1 mRNA upstream 186886 9220731 ~ 9267596 (+) True LOC103043335
XM_022669065.1 mRNA upstream 246798 9177238 ~ 9207684 (+) True LOC103022911
XM_022669063.1 mRNA upstream 246798 9177273 ~ 9207684 (+) False LOC103022911
XM_022669064.1 mRNA upstream 246798 9185299 ~ 9207684 (+) False LOC103022911
XM_007235442.2 mRNA upstream 425327 8994443 ~ 9029155 (+) True LOC103023541
XM_022669431.1 mRNA downstream 374668 9829485 ~ 10373341 (+) True LOC103040920
XM_022669074.1 mRNA downstream 930195 10385012 ~ 10424245 (+) True cdc42ep4
XM_007240714.3 mRNA downstream 982506 10437323 ~ 10441938 (+) True LOC103039374
XM_007240718.3 mRNA downstream 1021573 10476390 ~ 10485798 (+) True trim65
XM_022669432.1 mRNA downstream 1292820 10747637 ~ 11001550 (+) True dock1
TU47135 other upstream 2550485 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 2723058 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 2790895 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 2793231 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 5276399 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 1018557 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 1018557 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 1539544 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 1539544 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 2346641 11801458 ~ 11802204 (+) True G35903

Expression Profile