RNA id: TU48151


Basic Information

Item Value
RNA id TU48151
length 1995
RNA type TUCP
GC content 0.44
exon number 3
gene id dock1
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 10747637 ~ 11001805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atcACTCATGCATGCTATAAAATCTCTAATTCTTTCTTTTAACCCTTTGTGTTGACAGATCAGTCCACTACGTCCCCAGAGGCCGAAGAGTCAGGTGATAAACCTGGGGGGAGATAAGAGGCTCTCGGTGTCTCCGGCTCCTCCTGCTCAGCCAACGGCTTCATCTGCTCCTCCACCCATCACCCCCAGACTCAAACTCTCCTTCAGCaccctctcctcctccaATTTGGAGCTGAATGGGATGGGCTACGGAGAAAAGGGCGAGACTCCGCCTCCTCTACCAATCAAAAGCAGCATGGGTGATTACGGAAACCTGATGGAGAACCCGGAGCTCGCCAGCCCGACCAcgcctcctccacctcctccacaccAGCGGcaccttcctcctccactgccGAGCAAGACGCCTCCTCCACCCCCACCGAAGACCACGAGGAAGCAGGCGTCCATCGACTCAGGGATCGTCCAGTGAGTGCCGAGGAGAAAACGGGTGAATAGATTTGGACAGAAAGCTCAGCATTCCTCCCTCCAGAGCTTTAGCTCCTGTGATTTGGGTTCACCCTCTCTGACAGTGTGACAGAATGAAGAGTTCAGCAGAGCGCTCTCATAATCTCCACGCTGAAGGACAAGGCTGACCTGTCCAGGGACTCTGTCTCTCACCCACTCATTATTAGTCAAAGCCTCGTCCCAAGTGTCAGTGCCAGGTACAATATATATCATCTATTTCTCACCTCCGCCGGCCTGTAAAACCAAAACGCTCTGGTGAAGCATGCGGCGGCGGCTACCGCCAACAAATCACGCCTGGACTCATCCTCCTGCTGAACACGGCGGCGGCTCCTGCCCAGACAATTTATCAGCCTGCAGTTCCAGATTGTCCTTCTCCTTCTTTTCTCCAGTGTGCTGATAGAGTTGAGATGAGTCGAGATTTATTGAGACatgctctttttcttctttcagtctttcaatttcttttctttctttttatttcttctcttcctccaaTCCAATCTCAGCTTTTATGACCAAGACATGCGACCAACTCGAGTCGAGTCAAACTCAACTCACTTTCCAAAGCTTATAGGTTTTTTTTCCCTTGTTACATAAATAATCAGAATTAGAATCTTTCCGATTTATAATTTCATGTTTTCGTTCTTTCtttcctacatttttttttacacatacatttatacattctCTTTCTTATTTGCTACTTTTTGCTTttgtgattgattgattgtgatAAGAGATATGTTTTGCTCCTCTcctcaatatatacacacacacagatatgtaCAGAGGTTTGTATATATatgatttgtattttattgttactctatttttctttttttgtttcagaagTGAGGTCAATTTATTGTGGCctttttgtattaatattaacttTGCATCGAATTAACTGGCATTTTTATtccaaacagacaaaaaaaagggCTTTTAGGATTTTCAAGGACAGGGACTGTATAAAAGTACTTCTTAGGAAGTGCGATACTTtactgatttattgatttatatgggtgttttgtttttgttttttccattcCTTctgccttttctttatttttgttattttttttattttaattttttggagTGTACACAACTAACTCCCACTGTACTATCATTGTATAGAATTTGTAATGTTGTAACCTTAGGTTTCAATAAATTGTTGACTGTTCCAAATTCACTACTGACTTAAATAAACtcaatgtatgtatttttaaacctgctgctgatgcagcgcGCCTGTGCTGTGCTGCTTTCGTCCGTCTGATGTGAATCACTGCCGATGTGCTCCTGATGCCTCCCTTCACTTCAAAGTGCAATCGATGGCTGACCCTCACCTCCACTCTGGGGAAACGCAGGAATCGCTCTTTCAGCTCGGCTTGGTTTCTCTCTCCTGCTGAAATGTATTCATTTTCTCTCAGCAGTTTACATTAAAGGAGCTGCAGGGCTCTTTAGATCACAGCTGGAGCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48176 lncRNA upstream 145990 10847887 ~ 10848371 (+) True G35810
TU48160 lncRNA upstream 260354 10733778 ~ 10734007 (+) True G35794
TU48099 lncRNA upstream 506308 10487115 ~ 10488053 (+) True G35748
TU48093 lncRNA upstream 520783 10471380 ~ 10473578 (+) True G35744
TU48192 lncRNA downstream 77067 11078872 ~ 11079443 (+) True G35825
XR_002649871.1 lncRNA downstream 88487 11090292 ~ 11184100 (+) True LOC103033033
TU48203 lncRNA downstream 88564 11090369 ~ 11264386 (+) False LOC103033033
TU48206 lncRNA downstream 112844 11114649 ~ 11200184 (+) True G35832
TU48207 lncRNA downstream 152094 11153899 ~ 11159812 (+) True G35833
XM_007240718.3 mRNA upstream 508563 10476390 ~ 10485798 (+) True trim65
XM_007240714.3 mRNA upstream 552423 10437323 ~ 10441938 (+) True LOC103039374
XM_022669074.1 mRNA upstream 570116 10385012 ~ 10424245 (+) True cdc42ep4
XM_022669431.1 mRNA upstream 621020 9829485 ~ 10373341 (+) True LOC103040920
XM_022669066.1 mRNA upstream 1726765 9220731 ~ 9267596 (+) True LOC103043335
XM_015608531.2 mRNA downstream 38893 11040698 ~ 11042893 (+) True foxi2
XM_022669082.1 mRNA downstream 183085 11184890 ~ 11217372 (+) True ptpre
XM_022669102.1 mRNA downstream 1071558 12073363 ~ 12094731 (+) False glrx3
XM_022669103.1 mRNA downstream 1071558 12073363 ~ 12094731 (+) True glrx3
XM_022669106.1 mRNA downstream 1549954 12551759 ~ 12564495 (+) False bnip3
TU48092 other upstream 518578 10473374 ~ 10475783 (+) False G35744
TU48089 other upstream 519569 10473374 ~ 10474792 (+) False G35744
TU47135 other upstream 4090364 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 4262937 6730954 ~ 6731424 (+) True G34931
XR_455629.3 other upstream 4333110 6619671 ~ 6661251 (+) False LOC103029551
TU48301 other downstream 799653 11801458 ~ 11802204 (+) True G35903
TU48418 other downstream 1364735 12366540 ~ 12370962 (+) True G35967
TU48402 other downstream 1549975 12551780 ~ 12565971 (+) True bnip3
TU48468 other downstream 1700500 12702305 ~ 12703056 (+) True G35995
TU48945 other downstream 3461332 14463137 ~ 14463639 (+) True G36371

Expression Profile