RNA id: XM_022669432.1


Basic Information

Item Value
RNA id XM_022669432.1
length 6908
RNA type mRNA
GC content 0.50
exon number 54
gene id dock1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 10747637 ~ 11001805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attgattgtatccgtctctttctctcctcagcTATCTATAACTACGATGCTCGCAGTGAGGAGGAGCTGTCGCTGCAGATTGGAGACACAGTTCACATTCTGGAGACCTATGAAGGCTGGTACAGAGGAAACAGATTGAGGAGAAAGTCAAAGAAGgGTATATTTCCTGCCTGTTACATACATCTAAAAGAGGCTACGGTTGAGGGCAGCGGacCAAAGGAGACTGTGATCCCCACAGAGCTGCCCCTGGTGCACGAGGTCACCACCACTTTGCGGGAATGGGCTTCGATATGGAGGGACCTGTATGTGggtgATAAGCGGGAGATGTTTAATACGGTGAGGGATATGATCTATGATCTGATTGAGTGGAGATCTCAGATTCTGTCGGGAACTCTCCCGCAGGACGAGCTCTCAGAGCTCAAGCAGAAGGTCACCTCCAAGATCGACTACGGGAACAAGgttctggatctggatctggtGGTGAGAGATAAGGATGGGAACATTTTGGATCCGGACCTCACCAGCACCATCAGCCTGTTTAGAGCACATGAAGCCGCGTCCAGACAGATCGAGGAGCGAATCCAGGAGGAGAAGTCTCAGAAACAGAACATGGATCTGAGCAGACAGGCTAAGTTCGCCTCCACGCCGTCCTTCGCTCTGTTCGTTACTCTGAAGAACGTGGTGTGTAAGATCGGAGAGGACGCCGAGGTGCTGATGTCTCTCTACGACCATAACGAGTCCAAGTTCATCAGTGAGAATTACCTGGTGCGGTGGTCGAGCTCAGGCCTTGCCAAAGACATCGATCAGCCTCACAACCTGCGGGCTGTGTTTACAGATCTGGGCAGTGAGGATCTTAAGAGGGAGAAAATCAGCTTCGTCTGTCAGATTGTGCGAGTGGGGCGTATGGAACTGCGGGacaacaacactaaaaaacTGACGTCTGGCCTCAGGAGACCCTTCGGAGTAGCAGTAATGGATGTCACTGACATCATCACAGGCAAAATGGATGATGAGGACAAACAGCACTTCATTCCGTTTCAGCCGCTTGCGCTGGATGACGCCATCCGCCACAGGCAGCTGAACATCTCCCGTTTTTCACCCAGGGTGGCGGGAGAGAGCGACTTCCTGCAGAGCGTCATCAACAAGGTCATCGCTGCTAAAGAGGTCAATCACAAAGGTCAAGGGTTATGGGTCACCTTGAAGCTGCCTGGTGATATCCATCAGATCCGGAAGGATTTCCCGCACCTGGTGGATCGCTCCACCGCCGTCGCTCGCAAAATGGGCTTTCCTGAGATCATCATGCCAGgtgATGTCCGTAATGACATTTATGTGACCTTGGTTCAGGGAGATTTTGATAAAGGCAGTAAGACGACGCCCAAAAACGTGGAGGTGACCATGTCCGTGTACGATGAGGACGGAAAGAGATTAGAGAACGTGATCTTCTCTGGTGCAGGAGACGAGGGGATCTCAGAGTACAAGTCTGTCATCTACTACCAGGTCAAACAGCCGCGCTGGTTTGAGACCATCAAGGTTGCAATACCCATCGAGGACGTGAACAGGAGTCATCTTCGCTTTACGTTTAAGCATCGCTCGTCTCAGGACTACAAAGATAAGTCAGAGAAGATTTTTGCTTTGTCTTTTGTGAAGCTGATGAGATACGATGGCACAACGCTCAGGGACGGAGAGCATGATCTCATTGTCTACAAGGCCGAGGCGAAGAAGCTGGAGGACTCGTCTCTGTATCTGAACCTGCCGGCCACCAAGCTGGAGATGGAGGAGAAGGGCCACTTCCCCACCGGCAAGAACATGCCCACTCTGGGGAACTGCACCATCAGCAAGGACTCCTTCCAGATCTCCACACTGGTGTGCTCCACCAAGCTCACACAGAACGtggaTCTGCTTGGTCTGCTGAAGTGGCGCTCCAACACCAGCCTTCTCCAGCAGAACCTGCGGCAGCTCATGAAGGTGGAGGGAGGGGAAGTGGTGAAgtttctGCAGGACACTCTGGACGCTTTATTCAACATTATGATGGAGAATTCTGACAGCGACACTTTTGACACGCTGGTGTTTGATGCTTTGGTCTTCATTATCGGGCTGATCGCCGACCGAAAGTTCCAGCACTTTAATCCAGTCCTGGAGACGTACATTCGGAAACACTTTAGCGCCACCTTGGCGTACACaaAACTGACAAAGGTTCTGAAGAACTATGTGGATCATCCAGAGAAGTTAACAGACCAGCTGCTGAAGGCGATGAAGGCTCTGGAGTACATCTTCAAGTTCATTGTGCGATCTCGGGTCCTCTTTAACCAGCTGTATGAGAACAAGGGGGAAGCAGATTTCATGGAATCACTGAGGAACCTCTTCACCTCCTTCAGCACCATGATGAACAGTGATGCTGAGAGCACCAGCATGGTCAAGCTTCTCCTTAAGGGCGCAGCGCTGAAATACGTCCCCACCATCGTCAATGACGTTAAAATGGTTTTTGACCCTAAAGAGCTCAGtaagCTGTTTACAGAGTTTATTCTGAAGGTGCCGCCTGGCCGGTTGGTGAAGCAGAAGCTGTACTGTATGATTGACATCGTCCACAGTGACCTGTTCTCACAGCACGactgcagagAGATCCTGCTGCCGCTGATGACGGATCAGTTGAAGTTTCACTTGGAGCATCATGAGGAGCTGGAGGCTTGTTGCCAGCTGCTCAGCAACATACTGGAGGTGCTGTACAGGAGTGATGTgggtcaCACTCAGCTGCATGTTCAGATCATTATGGAGAAGTTGTTGAGGACGGTGAACAGAACCGTGATCTCAATGGGTCGAGACTCTCTTCTCATAGGGAGTTTCGTGGCGAGTATGACGGCTACGCTCCGGCAGATGGACGATTATCACTACGCTCACCTGATCAGCACCTTTGGAAAGATGAGGACAGATGTGGTGGATTTCTTAATGGAAACATTTATCATGTTCAAAGATCTCATCGGGAAGAACGTCTACCCCGGTGACTGGGTCATCATGAACACCATGCAGAACAAAGTCTTCCTGCGAGCCATCAATCAATACGCTGCTGTGCTGAACAAGAAATTCCTGGACCAGACCAACTTTGAGCTTCAGCTGTGGAATAACTACTTCCACCTGGCCGTGGCTTTCCTCACCCAGGAGTCCCTGCAGCTGGAGAACTTCTCCAGTGACAAGCGAGCCAAGATCTTCCACAGGTATCAGGACATGAGGCGGCAGATCGGCTTCGAGATCCGGGACATGTGGTACAACCTGGGTCCACACAAGATCAAGTTTATCCCGGAGATGGTGGGGCCGATCCTGGAGATGACTCTGGTGCCGGAGATTGAGCTCCGCAAAGCGACGATCCCCATCTTCTTCGACATGATGCAGTGCGAGTTCCACTTCACCCGCAGTTTCCAAAGGTTTGAAAATGAGATCATCACGAAGCTGGATCACGAGGTGGAGGGAGGCCGAGGGGACGAGCAGTACAAAATCCTCTTTCAGAAAATCCTATCAGAGCACTGTCGGAAGCACAAGTACCTGGCGAAGAGCGGCGAGACCTTCGTGAGTCTGGTGGTGCGTCTGCTGGAGCGTCTGCTGGACTACAGGACCATCATGCACGACGAGAACAAAGAGAACCGCATGAGCTGCACCGTTAACGTTCTGaatttcTACAAGGAAattgagagagaggagatgtaTATCAGgtacCTGTATAAGCTGCGTGACCTGCATAAGGAGTGTGATAACTACACAGAGGCTGCCTACACTCTGCTGCTGCATGCCAAGCTTCTCAAGTGGTCTGAGGAGGCCTGTGCGGCTCATCTGACTCAGAGAGACGGATATCAGGCGGTTACTCAGGGTCAGCTGAAGGACCAGCTCTACCAGGAGATCATCAACTACTTCGACAAGGGCAAGATGTGGGAGGAGGCCATTATTCTGGGGAAGGAGCTGTCTGAGCAGTACGAGAACGAGATGTTCGACTTTGAGCAGCTGAGTGCTTTATTGAGAAAGCAGGCACAGTTCTATGAGAACATAGTAAAGGTGATCAGGCCAAAACCGGACTATTTTGCTGTGGGTTATTATGGTCTGGGCTTCCCCTCCTTCCTCAGGAATAAGATGTTTATCTACCGCGGGAAGGAGTACGAGCGCTGGGAGGATTTCGTGGCCAGGCTGCTCACTCAGTTCCCCAACGCTGAGAAGATGAAGACCACCACGGCTCCCAGCGAAGATCTGCGCATGTCCTCCGGCCAGTATATTCAGTGTTTCACGGTGAAGCCCATGCTGGAGCTCCCGCCGAAGTTCCAGAACAAACCTGTGTCTGAACAGATAGTCAGCTATTACACCATAAATGAAGTCAATAAGTTCCAGTACTCCAGACCCGTCCGCAAAGGAGAGAAGGATCCAGACAATGAATTCGCTaaTATGTGGATTGAAAGAACAACATATGTAACTGCCTACAAGCTCCCCGGCATCCTGCGCTGGTTTGAGGCTCTGTCCACGTCCACAgagGAGGTGAGTCCGCTGGAGAACGCTATAGAGACCATGCAGCTCACCAACGAGAAGATCAACAACATGGTCCAGCGACACCTCAGCGACCCCAACCTTCCCATCAACCCCCTCTCCATGCTCCTCAACGGCATCGTGGATCCTGCAGTGATGGGTGGATTTACCAACTACGAGAAGGCGTTCTTCACTGAGAAGTACATCCAGGATCATCCTGAGGACCAGGAGAAGATTGACAAGCTGAAAGACCTGATCGCCTGGCAGatccCGTACCTGGCCGAAGGTGTGCGCATCCATGGTGAGAAAGTGACAGAAGCCTTGAGGCCGTTTCACGAGCGTCTGGAGGCGTGCTTCAAACAGCTGAAGGAGAAAGTGGAGAAGCAGTACGGAGTGAAAACACTGccCCCGATGGCAGACGAGCGTCGTGGATCCAGGCCTCGCTCTATGGTGCGCTCGTTTACCATGCCTTCCTCTCAGAGACCGCTGTCTGTCGCCTCCGTCACCTCCATCTCCTCAGACACCTCCCCCTCCAGACCAGGATCAGACGGGTAccaaactcacacacaaacttacacacGCGTACAAGGGCACACGTACAAACTCACAAACgcgtacaaacacacacaagcttgCAGGCGTGCAAACACGAGTACAAACTCGTATAAACTCACACGTACAAACGTAGCAAACAAGACTGCCGACGAGGCCGCAGATAGACGGGGCCTGATCAGTCCACTACGTCCCCAGAGGCCGAAGAGTCAGGTGATAAACCTGGGGGGAGATAAGAGGCTCTCGGTGTCTCCGGCTCCTCCTGCTCAGCCAACGGCTTCATCTGCTCCTCCACCCATCACCCCCAGACTCAAACTCTCCTTCAGCaccctctcctcctccaATTTGGAGCTGAATGGGATGGGCTACGGAGAAAAGGGCGAGACTCCGCCTCCTCTACCAATCAAAAGCAGCATGGGTGATTACGGAAACCTGATGGAGAACCCGGAGCTCGCCAGCCCGACCAcgcctcctccacctcctccacaccAGCGGcaccttcctcctccactgccGAGCAAGACGCCTCCTCCACCCCCACCGAAGACCACGAGGAAGCAGGCGTCCATCGACTCAGGGATCGTCCAGTGAGTGCCGAGGAGAAAACGGGTGAATAGATTTGGACAGAAAGCTCAGCATTCCTCCCTCCAGAGCTTTAGCTCCTGTGATTTGGGTTCACCCTCTCTGACAGTGTGACAGAATGAAGAGTTCAGCAGAGCGCTCTCATAATCTCCACGCTGAAGGACAAGGCTGACCTGTCCAGGGACTCTGTCTCTCACCCACTCATTATTAGTCAAAGCCTCGTCCCAAGTGTCAGTGCCAGGTACAATATATATCATCTATTTCTCACCTCCGCCGGCCTGTAAAACCAAAACGCTCTGGTGAAGCATGCGGCGGCGGCTACCGCCAACAAATCACGCCTGGACTCATCCTCCTGCTGAACACGGCGGCGGCTCCTGCCCAGACAATTTATCAGCCTGCAGTTCCAGATTGTCCTTCTCCTTCTTTTCTCCAGTGTGCTGATAGAGTTGAGATGAGTCGAGATTTATTGAGACatgctctttttcttctttcagtctttcaatttcttttctttctttttatttcttctcttcctccaaTCCAATCTCAGCTTTTATGACCAAGACATGCGACCAACTCGAGTCGAGTCAAACTCAACTCACTTTCCAAAGCTTATAGGTTTTTTTTCCCTTGTTACATAAATAATCAGAATTAGAATCTTTCCGATTTATAATTTCATGTTTTCGTTCTTTCtttcctacatttttttttacacatacatttatacattctCTTTCTTATTTGCTACTTTTTGCTTttgtgattgattgattgtgatAAGAGATATGTTTTGCTCCTCTcctcaatatatacacacacacagatatgtaCAGAGGTTTGTATATATatgatttgtattttattgttactctatttttctttttttgtttcagaagTGAGGTCAATTTATTGTGGCctttttgtattaatattaacttTGCATCGAATTAACTGGCATTTTTATtccaaacagacaaaaaaaagggCTTTTAGGATTTTCAAGGACAGGGACTGTATAAAAGTACTTCTTAGGAAGTGCGATACTTtactgatttattgatttatatgggtgttttgtttttgttttttccattcCTTctgccttttctttatttttgttattttttttattttaattttttggagTGTACACAACTAACTCCCACTGTACTATCATTGTATAGAATTTGTAATGTTGTAACCTTAGGTTTCAATAAATTGTTGACTGTTCCAAATTCACTACTGACTTAAATAAACtcaatgtatgtatttttaaa

Function

GO: NA

KEGG:

id description
K13708 DOCK1; dedicator of cytokinesis protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48160 lncRNA upstream 13630 10733778 ~ 10734007 (+) True G35794
TU48099 lncRNA upstream 259584 10487115 ~ 10488053 (+) True G35748
TU48093 lncRNA upstream 274059 10471380 ~ 10473578 (+) True G35744
TU48095 lncRNA upstream 274059 10472880 ~ 10473578 (+) False G35744
TU48011 lncRNA upstream 664549 10081497 ~ 10083088 (+) True G35677
TU48192 lncRNA downstream 77322 11078872 ~ 11079443 (+) True G35825
XR_002649871.1 lncRNA downstream 88742 11090292 ~ 11184100 (+) True LOC103033033
TU48203 lncRNA downstream 88819 11090369 ~ 11264386 (+) False LOC103033033
TU48206 lncRNA downstream 113099 11114649 ~ 11200184 (+) True G35832
TU48207 lncRNA downstream 152349 11153899 ~ 11159812 (+) True G35833
XM_007240718.3 mRNA upstream 261839 10476390 ~ 10485798 (+) True trim65
XM_007240714.3 mRNA upstream 305699 10437323 ~ 10441938 (+) True LOC103039374
XM_022669074.1 mRNA upstream 323392 10385012 ~ 10424245 (+) True cdc42ep4
XM_022669431.1 mRNA upstream 374296 9829485 ~ 10373341 (+) True LOC103040920
XM_022669066.1 mRNA upstream 1480041 9220731 ~ 9267596 (+) True LOC103043335
XM_015608531.2 mRNA downstream 39148 11040698 ~ 11042893 (+) True foxi2
XM_022669082.1 mRNA downstream 183340 11184890 ~ 11217372 (+) True ptpre
XM_022669102.1 mRNA downstream 1071813 12073363 ~ 12094731 (+) False glrx3
XM_022669103.1 mRNA downstream 1071813 12073363 ~ 12094731 (+) True glrx3
XM_022669106.1 mRNA downstream 1550209 12551759 ~ 12564495 (+) False bnip3
TU48092 other upstream 271854 10473374 ~ 10475783 (+) False G35744
TU48089 other upstream 272845 10473374 ~ 10474792 (+) False G35744
TU47135 other upstream 3843640 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 4016213 6730954 ~ 6731424 (+) True G34931
XR_455629.3 other upstream 4086386 6619671 ~ 6661251 (+) False LOC103029551
TU48301 other downstream 799908 11801458 ~ 11802204 (+) True G35903
TU48418 other downstream 1364990 12366540 ~ 12370962 (+) True G35967
TU48402 other downstream 1550230 12551780 ~ 12565971 (+) True bnip3
TU48468 other downstream 1700755 12702305 ~ 12703056 (+) True G35995
TU48945 other downstream 3461587 14463137 ~ 14463639 (+) True G36371

Expression Profile