RNA id: TU48232


Basic Information

Item Value
RNA id TU48232
length 1880
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G35850
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 10993753 ~ 11001082 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atattgaggAGAGGAGCAAAACATATCTCTTatcacaatcaatcaatcacaaAAGCAAAAAGTAGCAAATAAGAAAGagaatgtataaatgtatgtgtaaaaaaaaatgtaggaaaGAAAGAACGAAAACATGAAATTATAAATCGGAAAGATTCTAATTCTGATTATTTATGTAACAAGGGAAAAAAAACCTATAAGCTTTGGAAAGTGAGTTGAGTTTGACTCGACTCGAGTTGGTCGCATGTCTTGGTCATAAAAGCTGAGATTGGAttggaggaagagaagaaataaaaagaaagaaaagaaattgaaagactgaaagaagaaaaagagcatGTCTCAATAAATCTCGACTCATCTCAACTCTATCAGCACACTGGAGAAAAGAAGGAGAAGGACAATCTGGAACTGCAGGCTGATAAATTGTCTGGGCAGGAGCCGCCGCCGTGTTCAGCAGGAGGATGAGTCCAGGCGTGATTTGTTGGCGGTAGCCGCCGCCGCATGCTTCACCAGAGCGTTTTGGTTTTACAGGCCGGCGGAGGTGAGAAATAGATGATATATATTGTACCTGGCACTGACACTTGGGACGAGGCTTTGACTAATAATGAGTGGGTGAGAGACAGAGTCCCTGGACAGGTCAGCCTTGTCCTTCAGCGTGGAGATTATGAGAGCGCTCTGCTGAACTCTTCATTCTGTCACACTGTCAGAGAGGGTGAACCCAAATCACAGGAGCTAAAGCTCTGGAGGGAGGAATGCTGAGCTTTCTGTCCAAATCTATTCACCCGTTTTCTCCTCGGCACTCACTGGACGATCCCTGAGTCGATGGACGCCTGCTTCCTCGTGGTCTTCGGTGGGGGTGGAGGAGGCGTCTTGCTCggcagtggaggaggaaggtgCCGCTggtgtggaggaggtggaggaggcgTGGTCGGGCTGGCGAGCTCCGGGTTCTCCATCAGGTTTCCGTAATCACCCATGCTGCTTTTGATTGGTAGAGGAGGCGGAGTCTCGCCCTTTTCTCCGTAGCCCATCCCATTCAGCTCCAAATtggaggaggagagggtGCTGAAGGAGAGTTTGAGTCTGGGGGTGATGGGTGGAGGAGCAGATGAAGCCGTTGGCTGAGCAGGAGGAGCCGGAGACACCGAGAGCCTCTTATCTCCCCCCAGGTTTATCACCTGACTCTTCGGCCTCTGGGGACGTAGTGGACTGATCTGTCAACACAAAGGGTTAAAAGAAAGAATTAGAGATTTTATAGCATGCATGAGTgattaataattattcattcACTTTATTTCCTGCCATTTTTAAAactcaaaaatacataaaaatactgcaaaaaagATTTACATCCTGTGGGTGAGGTGGATATATGtcataataacaacaaaaacaacactgaTGGAAAAGGGttgttaaaatgaacaatggCGCATCAAGTTGTACATTTTTTGTCGGAGAATAATATCCTGAACTGCATACTACGTATTTTaggaaattattaaatatttatttttaatattaaaagtagTGTTGCATGCTACACTCATcatttgaatcattgattcaaaTTTGCACTCGATTCCTGAACCGATTCACTCAGTGAGAATCACTGAGACTCTATTCTCAACCCATCATCATGTTCAAGTTCCTCAAAGCATCCAATCACCACAGAGTCTCACAGATTTTAAACACCTTATTTTCTGGTTTGCTCTGCTTTCTAGCGGTCAAGTGAATCAAAGCACAGAACAATGACTCAGTTCTCAGTTATTATTTAGAGTTGGTCATTAGTTCATTGGCTAattgaaaaatgaatgattagattaatcaataaaaatattctttagGTGCAGTCGCCCTAGTTAGGTGCTCTAGTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48237 lncRNA downstream 26385 10942508 ~ 10967368 (-) True G35855
TU48136 lncRNA downstream 507377 10485987 ~ 10486376 (-) True G35777
TU48130 lncRNA downstream 527531 10465055 ~ 10466222 (-) True LOC111192368
XR_002649870.1 lncRNA downstream 527531 10465101 ~ 10466222 (-) False LOC111192368
TU48127 lncRNA downstream 530753 10461604 ~ 10463000 (-) False G35769
XR_002649901.1 lncRNA upstream 2173 11003255 ~ 11004125 (-) False LOC111192403
TU48249 lncRNA upstream 13162 11014244 ~ 11015792 (-) True G35863
TU48258 lncRNA upstream 56355 11057437 ~ 11070663 (-) True G35868
TU48259 lncRNA upstream 67520 11068602 ~ 11070663 (-) False G35868
TU48277 lncRNA upstream 152882 11153964 ~ 11200009 (-) True G35883
XM_022669080.1 mRNA downstream 112919 10827410 ~ 10880834 (-) True fam196a
XM_022669077.1 mRNA downstream 134640 10827410 ~ 10859113 (-) False fam196a
XM_022669076.1 mRNA downstream 499567 10487067 ~ 10494186 (-) True wbp2
XM_022669075.1 mRNA downstream 517876 10467821 ~ 10475877 (-) True mrpl38
XM_015603490.2 mRNA downstream 543468 10443259 ~ 10450285 (-) True LOC103039991
XM_022669081.1 mRNA upstream 74379 11075461 ~ 11083182 (-) False clrn3
XM_022669098.1 mRNA upstream 895971 11897053 ~ 12038582 (-) False ebf3
XM_022669084.1 mRNA upstream 895971 11897053 ~ 12038581 (-) False ebf3
XM_022669100.1 mRNA upstream 895971 11897053 ~ 12038581 (-) False ebf3
XM_022669093.1 mRNA upstream 895971 11897053 ~ 12038581 (-) False ebf3
trnap-cgg_1 other downstream 1540196 9453486 ~ 9453557 (-) True trnap-cgg_1
TU47869 other downstream 1562525 9426836 ~ 9431228 (-) True rpl38
TU47866 other downstream 1562589 9426075 ~ 9431164 (-) False rpl38
TU47867 other downstream 1562589 9426836 ~ 9431164 (-) False rpl38
TU47824 other downstream 1787842 9204570 ~ 9205911 (-) True G35512
TU48252 other upstream 52577 11053659 ~ 11077913 (-) False clrn3
TU48251 other upstream 71856 11072938 ~ 11077913 (-) True clrn3
TU48268 other upstream 80587 11081669 ~ 11083146 (-) False clrn3
TU48386 other upstream 1066464 12067546 ~ 12072403 (-) False LOC103036331
trnaq-cug_2 other upstream 1666754 12667836 ~ 12667907 (-) True trnaq-cug_2

Expression Profile