RNA id: TU48463


Basic Information

Item Value
RNA id TU48463
length 227
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G35990
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12669922 ~ 12670148 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tccagactgttctcatacagagttccccaatggtggaacaaactaccttccactaccagatcaggagaatctctcgctatctttaagaaactcctgaagacagaactcttcaaagagcacttactctcttaacacctctaacacactaactacttctaacctcatttccttcttcccctccttcactcctctatcctattattcccctttgacctccttttatccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48456 lncRNA upstream 67126 12586898 ~ 12602796 (+) True G35984
TU48427 lncRNA upstream 94474 12573915 ~ 12575448 (+) True G35974
TU48426 lncRNA upstream 97577 12570113 ~ 12572345 (+) True G35973
TU48430 lncRNA upstream 100342 12569178 ~ 12569580 (+) True G35977
TU48401 lncRNA upstream 102981 12548445 ~ 12566941 (+) False bnip3
TU48464 lncRNA downstream 8099 12678247 ~ 12678497 (+) True G35991
TU48425 lncRNA downstream 24682 12694830 ~ 12695616 (+) True G35972
TU48465 lncRNA downstream 26801 12696949 ~ 12697208 (+) True G35992
TU48480 lncRNA downstream 102840 12772988 ~ 12794204 (+) True G36004
TU48487 lncRNA downstream 165131 12835279 ~ 12837320 (+) True G36011
XM_022669110.1 mRNA upstream 4994 12603957 ~ 12664928 (+) False jakmip3
XM_022669109.1 mRNA upstream 4994 12605464 ~ 12664928 (+) False jakmip3
XM_022669111.1 mRNA upstream 4994 12606008 ~ 12664928 (+) False jakmip3
XM_022669112.1 mRNA upstream 4994 12606239 ~ 12664928 (+) False jakmip3
XM_022669118.1 mRNA upstream 4994 12606239 ~ 12664928 (+) True jakmip3
XM_022669122.1 mRNA downstream 1397 12671545 ~ 12692068 (+) True dpysl4
XM_022669121.1 mRNA downstream 3835 12673983 ~ 12692068 (+) False dpysl4
XM_007248749.3 mRNA downstream 34190 12704338 ~ 12710368 (+) True LOC103039392
XM_022669128.1 mRNA downstream 47505 12717653 ~ 12831319 (+) False LOC103024023
XM_022669124.1 mRNA downstream 47505 12717653 ~ 12831319 (+) False LOC103024023
TU48402 other upstream 103951 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 298960 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 867718 11801458 ~ 11802204 (+) True G35903
TU48151 other upstream 1668117 10994361 ~ 11001805 (+) False dock1
TU48150 other upstream 1668383 10994361 ~ 11001539 (+) False dock1
TU48468 other downstream 32157 12702305 ~ 12703056 (+) True G35995
TU48945 other downstream 1792989 14463137 ~ 14463639 (+) True G36371
TU49039 other downstream 2119232 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 2762683 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 4330234 17000382 ~ 17018884 (+) False sun1

Expression Profile