RNA id: TU48533


Basic Information

Item Value
RNA id TU48533
length 988
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G36045
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12573855 ~ 12574842 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttgctggtCAATGCCTGTCAACATTCCTCCCCTGGCCTCAGTCCCAGGCCTCGGGTGTTTTTACCTTTTAAGCACTTACTACAGATctccattatttatttatttttggtcagTGGACAGATTGCAgatcttttgtttctttatttttagtttcgttttgtttttcGTTTCGTTTTGTTTCTCATGCATAATAACATCTACTCACTGACTGTGtctatatatctaaatatatatctatatataaattACCACACCAACGTCTGGTGTCAAAACCacttaataaaaatagcaaaactaTAAAGAGAAAGCGTTTTTTACATGACGAGCAGGTATGTATGTGGATTTATTTggttatttgattttatttgattttttttttctgttctgtattCTGCATGTAATCTGCATTATGTGGGTTTGGAGCGGCAGTAATGAAATGTGAAGTCATCCtgctgatcttcatctaaaccAGCTGCTTAAAGGAGTCAGATCCACCTTAAAATCTTATCTTTTacaccctgcgttcacactacCAGAGAACAGCGCAAAAAAAACGACCAGCTTTTATTCTTTAGGgttgttttgtatattttttttttttttttttttggtgtggtgcagtggataacaccactgcatgccagtgagctactaaatcatgtgggagactggggttcaattcctactctgggtgactgaatgctgctctacaccaataccagtccttgggcaagactccaaactcctaacactacatcgGACAAAtactgtaatagaaataaactTGTCActctggattagagcattagatattttattccataaaattaaaaaaaatgtaggatCCAATTAAGTTCTAATTTCTAATTGGAATCCAATTTCTGACCTATGaacctaggcctgtcacgataagcattttttgtggatgatatatcgtcccagaaatgattgcgatacacaatatttttttgtaattttaagacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48531 lncRNA downstream 112001 12459772 ~ 12461854 (-) True G36043
TU48384 lncRNA downstream 506468 12050053 ~ 12067387 (-) True G35946
TU48379 lncRNA downstream 549279 12020754 ~ 12024576 (-) True G35944
TU48375 lncRNA downstream 578635 11975089 ~ 11995220 (-) True G35941
TU48314 lncRNA downstream 722489 11851126 ~ 11851366 (-) True G35914
TU48535 lncRNA upstream 87 12574929 ~ 12575451 (-) True G36047
TU48551 lncRNA upstream 30153 12604995 ~ 12605356 (-) True G36061
TU48574 lncRNA upstream 111184 12686026 ~ 12686397 (-) True G36082
TU48572 lncRNA upstream 119984 12694826 ~ 12695659 (-) True G36080
TU48567 lncRNA upstream 129510 12704352 ~ 12706177 (-) True G36075
XM_022669105.1 mRNA downstream 156585 12243281 ~ 12417270 (-) True tcerg1l
XM_022669101.1 mRNA downstream 501428 12067533 ~ 12072427 (-) True LOC103036331
XM_022669088.1 mRNA downstream 535278 11897053 ~ 12038577 (-) False ebf3
XM_022669107.1 mRNA upstream 669 12575511 ~ 12603380 (-) True ppp2r2d
XM_022669108.1 mRNA upstream 1084 12575926 ~ 12595766 (-) False ppp2r2d
XM_007248750.2 mRNA upstream 123746 12698588 ~ 12702831 (-) True LOC103039695
XM_007248747.3 mRNA upstream 262326 12837168 ~ 12914367 (-) True LOC103038875
XM_007248748.3 mRNA upstream 262326 12837168 ~ 12868413 (-) False LOC103038875
TU48386 other downstream 501452 12067546 ~ 12072403 (-) False LOC103036331
TU48268 other downstream 1490709 11081669 ~ 11083146 (-) False clrn3
TU48252 other downstream 1495942 11053659 ~ 11077913 (-) False clrn3
TU48251 other downstream 1495942 11072938 ~ 11077913 (-) True clrn3
trnap-cgg_1 other downstream 3120298 9453486 ~ 9453557 (-) True trnap-cgg_1
trnaq-cug_2 other upstream 92994 12667836 ~ 12667907 (-) True trnaq-cug_2
trnaq-uug other upstream 93874 12668716 ~ 12668787 (-) True trnaq-uug
TU48566 other upstream 134966 12709808 ~ 12711545 (-) True G36074
trnam-cau_19 other upstream 622860 13197702 ~ 13197775 (-) True trnam-cau_19
trnam-cau_20 other upstream 625324 13200166 ~ 13200238 (-) True trnam-cau_20

Expression Profile