RNA id: TU48566


Basic Information

Item Value
RNA id TU48566
length 1652
RNA type TUCP
GC content 0.38
exon number 4
gene id G36074
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12709808 ~ 12711545 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagtaacaaaatgaaaaatcatgAGCAAAGCATAAGACTTGTAATGAAATTCTAGACTGATCTGAGAACAGTCATATTATGGACTCAGACATAAGCCTGAGGCCATTTCAGCCTTGTTTACTGAATCACCTTCACTCGAACTGGACTCGATTTGGCCTTATATATATACGATATGATTACGGTTTCGTAAAAATGCATAGAATGAGCCGAGAAAAACGGCTCAacattacataattacataattcactgagaaaaaaatgtctgtatgaTTATCAGTACAACAAATTATGGAGAAGAAAGAGGAAAGAGGGAGATTCTTTTCAACAGAATTAGAGCCTCTGGTTTATCCCAGcTTGCATACAGGACACGCCcccttttcctctttttcttttcacagCGAGTAAATTATTGGGCTTGCACTGACTCTTCTCAGtgcagtatatttatatagattaaGAATACAGATAGGAGGCTAATTCTCGTAAGTCTGCTGTCCTCCCAGAAGCGTCCTGGAAAGTAAGTAAGATTAGATTGAGAGACAGGCAGCTAAAAGGTTAATAGACTGGTAgagtattaaagtaaattattcatttattaggGCAATATATTACGCAGGaaacccataaaagagaacTTCGTTGTGAAATTGACTTCTTTTATgttgtaaaacatgataaaaatgtactaacctccactctcctgcagctttccgagaaacaggcatattttttttttattttgcactgataaattgctttttacaccattattcaggctcaaagttgCTCCACACCTTATAGGTAggatccagagagccctgatttttaaaacgaggcattaagaagtttaaaagtgcactttaaaagatgtctgtctttgttaaagaacacaatacaaagtatttcagcatgaaagcaggtatttgtaatgtgtgacagctgCTACATGCGACgagatgtagtaatgaatcattactacattttgtgtatatgtcattatcagtacagtgatggagGCACTCTGAGCTACAAAGAagtgttatgggatgtaaacagtggtttttaataagcttcttgtgcacttttcaagtcattaatgcctcgttttaaatgtcagagctctctaGATTCTagcaatgaggtgtggagctactttgagctggataacggtgtaaaaagtgatttattggaGCAAAATATGCCCAAAAGTGGCaaaaagcacaaaatactgaatctcagaaagctgcaggagagcagcggcgggctattcaacaaaggtaagtactttttatcatgttttactacacaaaaaaaagtccattttacattgaagttctcctttaaaacccTAAAACCTCCACATTCTTCATTACACCAGCTTTTAACATACTATAAACCTATGTTGGGCGTCAGAGGAGTCCAGAACTCCAGGCTTGAGCAGCTTGAGCAGGGAATTCTGCTGAATACTCTTTTATAAAAACAGAGGTTTTCATCAGGTGTGGCACTGAAGAGTCCCTGGTGGCTTCCAGCAGGGTAAAACAGCTCAAGTGGAGACAGAAACGTGACAAGTCTTTTGCACGAGTGAGACTCGGCCACATCACACGgccaacatctctctctctggcttctTCTTCGGCGTTTCCTTTTCCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48567 lncRNA downstream 3631 12704352 ~ 12706177 (-) True G36075
TU48572 lncRNA downstream 14149 12694826 ~ 12695659 (-) True G36080
TU48574 lncRNA downstream 23411 12686026 ~ 12686397 (-) True G36082
TU48551 lncRNA downstream 104452 12604995 ~ 12605356 (-) True G36061
TU48535 lncRNA downstream 134357 12574929 ~ 12575451 (-) True G36047
TU48595 lncRNA upstream 119797 12831342 ~ 12832622 (-) True G36100
TU48588 lncRNA upstream 123089 12834634 ~ 12849471 (-) True G36093
TU48601 lncRNA upstream 219280 12930825 ~ 12945228 (-) True G36104
TU48614 lncRNA upstream 242778 12954323 ~ 12954745 (-) True G36115
TU48621 lncRNA upstream 279529 12991074 ~ 12991421 (-) True G36122
XM_007248750.2 mRNA downstream 6977 12698588 ~ 12702831 (-) True LOC103039695
XM_022669107.1 mRNA downstream 106428 12575511 ~ 12603380 (-) True ppp2r2d
XM_022669108.1 mRNA downstream 114042 12575926 ~ 12595766 (-) False ppp2r2d
XM_022669105.1 mRNA downstream 292538 12243281 ~ 12417270 (-) True tcerg1l
XM_022669101.1 mRNA downstream 637381 12067533 ~ 12072427 (-) True LOC103036331
XM_007248747.3 mRNA upstream 125623 12837168 ~ 12914367 (-) True LOC103038875
XM_007248748.3 mRNA upstream 125623 12837168 ~ 12868413 (-) False LOC103038875
XM_022669415.1 mRNA upstream 214688 12926233 ~ 12928968 (-) True LOC103038558
XM_022669433.1 mRNA upstream 496049 13207594 ~ 13209507 (-) True LOC111192419
XM_022669130.1 mRNA upstream 542903 13254448 ~ 13260826 (-) True LOC103042955
trnaq-uug other downstream 41021 12668716 ~ 12668787 (-) True trnaq-uug
trnaq-cug_2 other downstream 41901 12667836 ~ 12667907 (-) True trnaq-cug_2
TU48386 other downstream 637405 12067546 ~ 12072403 (-) False LOC103036331
TU48268 other downstream 1626662 11081669 ~ 11083146 (-) False clrn3
TU48252 other downstream 1631895 11053659 ~ 11077913 (-) False clrn3
trnam-cau_19 other upstream 486157 13197702 ~ 13197775 (-) True trnam-cau_19
trnam-cau_20 other upstream 488621 13200166 ~ 13200238 (-) True trnam-cau_20
trnal-caa_1 other upstream 2240092 14951637 ~ 14951749 (-) True trnal-caa_1
trnal-caa_2 other upstream 2240296 14951841 ~ 14951953 (-) True trnal-caa_2
trnal-caa_3 other upstream 2240559 14952104 ~ 14952216 (-) True trnal-caa_3

Expression Profile