RNA id: TU48888


Basic Information

Item Value
RNA id TU48888
length 2379
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G36322
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14391304 ~ 14443156 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaagaGTCTAtctctctctctctcttttgcttgctctctctctttctttcttgttttttctctctctctctctctttttcacacatacacacactcacacagagtcATCCACAGCTCAACCAAGCTGAGGTACCAAGTACTACATTGTTATGTTCAAGACTATGTTTGAAACTGTCCAGCCAAAAAGTGTCCGAAGATGACCCCTGCACCTGAAGAAGTCCCTGGAACCTTGGAAGCTTGGAAGAGAGCGAGATGATATTCTTACTCTTACAATTAAAGGATATTTCTTTGAAGTTGATTCAAAAGCAGAAATGTCCCTTAATTGTTGGGTTAAGTATATTCCCAGTTCGCCGAAAGCACCAGCACCGCAGACAGCTCCCACCAATGGCCGAACAGTCTCCTCCAAGACCTGATTCAGGTTCAGATGGAGGGGGATCCTCCTCTCCGTCctgtctgtccgtccgtccCACAGTATGCACATTCCTTACTTCCATCTCCATCATTCAGTCTTAAATCCTCTTTAACACTTTGATCATGAAGGGTCCCCTGTTAGCCTATAGGTGACAGAATTGAGCAGTATGAGCAGTGTGAATTGGGTGTTACGTCAGTGCAAGAAACAATCAAGATCAATATATAGATGAGGACAGGCTTTAGCATTTGGACATTATTCACCCTGATCTCCAGGGGTTCCATTATGGTGTCAATAAGGGGATCTGCCGGCCGGCAATTGTGCTGCTCTGAGAACAGCTTAGTAAAATGACTAGGCTTTTGGTGCCAAGTGTGTGCACCAAGACTGGGAAGAGCGAGAAAAAGGAGAGCAGGGAGTTGgaattgtctgtgtgtgtgtgtgtgtgtgtgtgagtgagaaagagagagaaagagcgagagagagagagagagagagagagcatgcagCGAAGAATCAGTCAAGGTTTATCGGAAGGGAAAGAGCGCCCCTCCTGGGCTGTGGCAACAAGTGGTTGCTGCAGCTTGCGGGAGAGTGAAGTAGTCAGAGCAGAGAGGAATACTCATATAGAGGAGGTCGTTCTGAAGTGAAACCGGAAAATCTCAAAACAGTGCAAAGAAAAAAGAGTGTTGGATgattgcacccagaaggaagggtcagattgcaatgctatttggAAGAAAAGTAGTggtaccaggaacaataaatgattaagctGTGTAATGAACAAGTCTTGGTAATATTCACTGAGCGTTGCATACAGAActagtgtgtaatacatctgtaacGCAACATGCCAGATGTATCAGCATAGAAATGTTGAGGTTTCTATTGATTTCCTGTGATAAATTCATGCAACTTGGATattttcacacagttcctgcagattttcaAGCAAGGACAGGTCTGGCGACATGGCTAGGAATCtcatagtatctgtgtcttcagatggcagcagtatgtgatgagcattgtcttgttggaatagcCCACCAGAATGGAAAGTGTAAGTAAAGGTTTATCAGAAAGGGAACATATGGTTGCTACAGATTGCAGGAGAACGAGGGAGATGGAACAGAGAGGAAAACCCTTTGTCTGAACTGCTAGAGCGACTGGGAAATctcaaaaacaatgaaaaagtgcaaagaaaaaagaggtTTGAATGTAAATAGCCTAATTGCAAAAAtaattgcacccagaaggaagtgtcggATTGGAATTCCATTCGGAAGGAAGATAACAGCTACACTAGCAAGAACACTAGACAATTAGACAATTAGacatttagacatttagaaAGTTAGCCTGAAGTCTTGGTCATGGCAATTAAGCATTGCATACAGAAGTATTGTGCAACCCATGTAACGTATGTGTAATgaatgtgtaatgcatgtgtaatgcaacatGCCAGTTGTCTCAGTGTAGAGATGTTGAGGTTCCTATTGAtttcctgtgataatccattcAATTCATATAACTTATATTAGATATgttcacacagttcctgcagcttttcaatcagggataggtctggCAACATGGCtggatggcagcagtatgtggatgagcattgtcctgttggaatagcccACCAGAGTGAAGAGTAGGTCAAGTTTTATTGGAAAGGGAAAGAGCGCTCCTTCTGGACTGTGGCAACAAGTGGTTGCTGTAGATTGTAGGAGAACGAGGGAGACAACATAGAGAGTAATAGACACATAGATAAATAAGAGGTAAATACTCTTATTGCAAAAATAATTGCACCAGGAAGGAAGTATCTGATTGGAATCCTATTTGTAAGTTAGATAACAGCCACCAAGAACATAAGATGCTTAGAAAGTTAGACTGAACTCTTAGTCTGGACTGGactaattactacctcactggtcttttttgcacactttttgcacactgc

Function

GO:

id name namespace
GO:1902911 protein kinase complex cellular_component
GO:0016533 protein kinase 5 complex cellular_component
GO:1902554 serine/threonine protein kinase complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48859 lncRNA upstream 416570 13863295 ~ 13974734 (+) False LOC111192373
XR_002649875.1 lncRNA upstream 421223 13965435 ~ 13970081 (+) True LOC111192374
TU48864 lncRNA upstream 467350 13863295 ~ 13923954 (+) False LOC111192373
TU48860 lncRNA upstream 493978 13863295 ~ 13897326 (+) True LOC111192373
XR_002649874.1 lncRNA upstream 495269 13895010 ~ 13896035 (+) False LOC111192373
TU48944 lncRNA downstream 18986 14462142 ~ 14462391 (+) True G36370
TU48946 lncRNA downstream 35662 14478818 ~ 14479322 (+) True G36372
TU48952 lncRNA downstream 122797 14565953 ~ 14567912 (+) False LOC107197918
TU48956 lncRNA downstream 137378 14580534 ~ 14589788 (+) True G36382
XR_002649877.1 lncRNA downstream 173567 14616723 ~ 14618634 (+) False LOC111192375
XM_007260024.3 mRNA upstream 761290 13525763 ~ 13630014 (+) True ccser2
XM_007260025.3 mRNA upstream 761290 13525763 ~ 13630014 (+) False ccser2
XM_007260026.3 mRNA upstream 766592 13525763 ~ 13624712 (+) False ccser2
XM_007260027.2 mRNA upstream 766630 13525763 ~ 13624674 (+) False ccser2
XM_007260023.3 mRNA upstream 870602 13514311 ~ 13520702 (+) True LOC103039668
XM_022669156.1 mRNA downstream 121769 14564925 ~ 14567161 (+) True LOC107197918
XM_022669434.1 mRNA downstream 180073 14623229 ~ 14645576 (+) True btbd16
XM_022669164.1 mRNA downstream 208494 14651650 ~ 14701359 (+) False LOC103046321
XM_022669159.1 mRNA downstream 208495 14651651 ~ 14702499 (+) True LOC103046321
XM_022669161.1 mRNA downstream 208495 14651651 ~ 14702499 (+) False LOC103046321
TU48468 other upstream 1688248 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 1825333 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 2020342 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 2589100 11801458 ~ 11802204 (+) True G35903
TU48151 other upstream 3389499 10994361 ~ 11001805 (+) False dock1
TU48945 other downstream 19981 14463137 ~ 14463639 (+) True G36371
TU49039 other downstream 346224 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 989675 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 2557226 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 2557226 17000382 ~ 17018884 (+) False sun1

Expression Profile