RNA id: XM_022669156.1


Basic Information

Item Value
RNA id XM_022669156.1
length 2237
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC107197918
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14564925 ~ 14567912 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTTGATGAGCTTGGTTTGCGCACTCCCCGCAGTCATTATCAAAGGGACTCTTCATCTCTATTCACGTCTGCCCGCACACGACCATCGGCACTACACCACGCCCCCCTCGCGGCAGCAGCCACACATAGAAGGGGCTTGGCAATAAATACCGCCTCCAAACCCAAAAGAGAGGGCAAGATGATGTTGGAAGCTTCTGGGGAAAGCATGGCGACGGCTCAACACAGCTCTTACAGGCCGCTGCTCTTGCTGCGAGACACTGATTCCCAACACCGGTGGAACATCGAAGATACGGCGGAGGTCAAGGCGATGTTGTGCAGTACTTGGACAGATGATGGGCCACAGATCCACAGGCCTCACTGCGATCCTTGCATTGCGGCAGAGCAAGACCAGTGTGCCCTGGCCAGGGCACGAAGACGGCGGAGGCTGGCGGCCAATGCAAGGGAGCGCAGAAGGATGCTGGGCCTGAACGTGGCTTTCGACAGGCTGAGGAGCGTCATCCCCAACGTGGAGAGTGCCAGAAAGCTGTCAAAGTCGGAGACACTCCAGATGGCGCAGATCTACATCAGTACACTGAGCGAGCTGCTGCAGGGACAGGACAGTGAGTGCGGACAGTGGCGCGCTGCAGCACAGAGGGATCACGCAGGACAGCGACAGCAAGCCACAGCAGTACAAGGAGAACAGACACAGCAGAGCGTCGAACAGAACACCTCCCCACATCAGAATACCGTTCAGGAACACGTCGTAGACACTGTCCGGCCGCACATGGAGCGCATGGAGCGCTGGGAAAGAAGCAACGGCGCCAAGTAAAATGTCTACAGAacgtgttttacatttttttaatgtaggcTCTATATTGCACTTTGTTAGTGATAATTTATGTAATAATGATGATCAGGTCATGATTGACAAagactaaataaaatgttttttaaaaaaagaaagaaaatgaaaaaacaactcGTGTTGAATACATCACACTGGTCCACGAAAACCGCAGAAAGCTGACAAGATGTATTGaaagtagcaatttttattcgAGTTAAAATTATGTACAAGTAACCAAAGACATCATTTCTGAAATTGGTACAAAGTTCAGGTTCCTGCAGTTGGCTTTGGATGCCTCTTTAATTTCACCTCAAACACAACTGAGAAAAAtgctgtataaaataaaaataagatcgGATTCTGAAAAGTAGTCTATCATTCTAGATTTCCAATAGCcaatatttacagaaatatgTACATTTGTGTGGTTCCATTAATATTCCAGAATTTGCTAATTCAAAAAACATTGGGATGTTTAGCGTGTTGGATACAGccctgacagagagagagaaaaacacacacacacacacgcacacacatacacgatGACACCACTGTTTCTGGATCAGCCCAAGGACCAGCAGAACAGTCTGCagcagacaaacaaaaaaattaaaaaaaactaacagaAAAAGCAATACATATTTTGGAAATACAATTGAAAAGAAGGTAAAATAAGACAATtaagatttaatattttatatctattCTAAGTCAATTTCCAAATTCACCAAACAGGGGAGACTTTTCAAATTTTAAATGATGGAAAAAGTGCACAGGGGCTTTTTGCATTGTACGAGAGAGAGTAGCGAACTTGTCAGaaacagcatatatatatatgaagtgGATATTTGTAGGATGTCTTTGTATTAACTTGGAAGCGTGAACATggggcaaaagaaaaaaaaaaaagatgaacacACCGTGTCTGAACTTGGTTTAAAAAAACTGGCCTGTGGAGAGATGACACAACTTCAAGTGCTTTATGGAAATGTAACTTTAAGATTAAGATATTTTGATGTACCCTTGcattgaaataaattaataacaacaataattaaACAAGGAAAACTGAGCTGGGCACTTCAGCTTATTATCTCAAATACCATTAATAAcattgggtgtgtgtgtgttgaggtcaTTCAAATACAGGAGAACACAAACGGATTTGCGATTTGTTAAGATTTTAACGTTTCAGCTTTCATTTGACTTTGCATACAACACTAAGGAAAGCATGCtgcgtgattttttttttatagcttctGTTGGGAATTCTCAGTGATGCGCTTATAATCACGCAAATCCCTGAAAGAGATTAGGGACGTGATGCCCAGGTCTTTGACACACATGGTACATGGGGTGAGACTTCTAAAACTGAGCTACCACCACcagttatacaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48946 lncRNA upstream 85603 14478818 ~ 14479322 (+) True G36372
TU48944 lncRNA upstream 102534 14462142 ~ 14462391 (+) True G36370
TU48888 lncRNA upstream 121769 14391304 ~ 14443156 (+) True G36322
TU48859 lncRNA upstream 590191 13863295 ~ 13974734 (+) False LOC111192373
XR_002649875.1 lncRNA upstream 594844 13965435 ~ 13970081 (+) True LOC111192374
TU48956 lncRNA downstream 13373 14580534 ~ 14589788 (+) True G36382
XR_002649877.1 lncRNA downstream 49562 14616723 ~ 14618634 (+) False LOC111192375
XR_002649878.1 lncRNA downstream 49584 14616745 ~ 14618634 (+) False LOC111192375
TU48971 lncRNA downstream 49689 14616850 ~ 14618634 (+) True LOC111192375
XR_002649876.1 lncRNA downstream 49887 14617048 ~ 14618634 (+) False LOC111192375
XM_007260024.3 mRNA upstream 934911 13525763 ~ 13630014 (+) True ccser2
XM_007260025.3 mRNA upstream 934911 13525763 ~ 13630014 (+) False ccser2
XM_007260026.3 mRNA upstream 940213 13525763 ~ 13624712 (+) False ccser2
XM_007260027.2 mRNA upstream 940251 13525763 ~ 13624674 (+) False ccser2
XM_007260023.3 mRNA upstream 1044223 13514311 ~ 13520702 (+) True LOC103039668
XM_022669434.1 mRNA downstream 56068 14623229 ~ 14645576 (+) True btbd16
XM_022669164.1 mRNA downstream 84489 14651650 ~ 14701359 (+) False LOC103046321
XM_022669159.1 mRNA downstream 84490 14651651 ~ 14702499 (+) True LOC103046321
XM_022669161.1 mRNA downstream 84490 14651651 ~ 14702499 (+) False LOC103046321
XM_022669162.1 mRNA downstream 84490 14651651 ~ 14701359 (+) False LOC103046321
TU48945 other upstream 101286 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 1861869 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 1998954 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 2193963 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 2762721 11801458 ~ 11802204 (+) True G35903
TU49039 other downstream 222219 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 865670 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 2433221 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 2433221 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 2435279 17002440 ~ 17018884 (+) False sun1

Expression Profile