RNA id: TU48956


Basic Information

Item Value
RNA id TU48956
length 681
lncRNA type inter_gene
GC content 0.52
exon number 5
gene id G36382
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14580534 ~ 14589788 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTTGTCGTGCGTGAGGTTGAGCAGGACGCCGATAACGGCTCTCATACAGTCCTCCACAGCTTTACCCACGCTGCTGTTGCTGCAGAAGGGTAGTGGCGTCCCAGACGAGCTCATGCTAACCTCTCTGCTGTACCTCTGAATCATCTCCTCGCAGTGACGCAAAGCCTTGGCAGAAGAGACGATGAGTTGCGAGTCCTTGTAGGCGATCAGGTAAGCCTGGTTCTCCGGGTTGTGAACAGTGACACTGTCCAGAACGCGCAGACATCTCTCAGCCCCCCACAGCGAGGCCACCAGGTTCTCCTTATCGTCCTCTCGGCTGAGATTCTCCACACACTCTTTCACTTTATCTACAATGTGATCCAGACCTCCCAGTAAACGCAGCTCTTCTTTGAACCAGTCTCCTGCCCTTTTCGAGGTCAGCGATAATAACGTCTCCATGGCAAGATGACccgtcGTGATGTTTTCCAGGTCCAGATGCTTGTTGTGAACCGTCTCGCAGAGCTTACGGattttctctttcactttatTCATTTCTTTTGAAGACAGTTGGTTGTCGGTGGACGTGTCCTGATCGAGTTCCAGCAACCGAATCATGAGCTCTAGACTGGCCCGGTCCAAATCCATGTTTAACCGGTCTCTGCTTAGAATGTACATCAGAGACGCTGTGCATAGAGCTAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48952 lncRNA upstream 12622 14565953 ~ 14567912 (+) False LOC107197918
TU48946 lncRNA upstream 101212 14478818 ~ 14479322 (+) True G36372
TU48944 lncRNA upstream 118143 14462142 ~ 14462391 (+) True G36370
TU48888 lncRNA upstream 137378 14391304 ~ 14443156 (+) True G36322
XR_002649875.1 lncRNA upstream 610453 13965435 ~ 13970081 (+) True LOC111192374
XR_002649877.1 lncRNA downstream 26935 14616723 ~ 14618634 (+) False LOC111192375
XR_002649878.1 lncRNA downstream 26957 14616745 ~ 14618634 (+) False LOC111192375
TU48971 lncRNA downstream 27062 14616850 ~ 14618634 (+) True LOC111192375
XR_002649876.1 lncRNA downstream 27260 14617048 ~ 14618634 (+) False LOC111192375
XR_002649879.1 lncRNA downstream 27262 14617050 ~ 14618634 (+) False LOC111192375
XM_022669156.1 mRNA upstream 13373 14564925 ~ 14567161 (+) True LOC107197918
XM_007260024.3 mRNA upstream 950520 13525763 ~ 13630014 (+) True ccser2
XM_007260025.3 mRNA upstream 950520 13525763 ~ 13630014 (+) False ccser2
XM_007260026.3 mRNA upstream 955822 13525763 ~ 13624712 (+) False ccser2
XM_007260027.2 mRNA upstream 955860 13525763 ~ 13624674 (+) False ccser2
XM_022669434.1 mRNA downstream 33441 14623229 ~ 14645576 (+) True btbd16
XM_022669164.1 mRNA downstream 61862 14651650 ~ 14701359 (+) False LOC103046321
XM_022669159.1 mRNA downstream 61863 14651651 ~ 14702499 (+) True LOC103046321
XM_022669161.1 mRNA downstream 61863 14651651 ~ 14702499 (+) False LOC103046321
XM_022669162.1 mRNA downstream 61863 14651651 ~ 14701359 (+) False LOC103046321
TU48945 other upstream 116895 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 1877478 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 2014563 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 2209572 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 2778330 11801458 ~ 11802204 (+) True G35903
TU49039 other downstream 199592 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 843043 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 2410594 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 2410594 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 2412652 17002440 ~ 17018884 (+) False sun1

Expression Profile