RNA id: XR_002649877.1


Basic Information

Item Value
RNA id XR_002649877.1
length 472
lncRNA type inter_gene
GC content 0.48
exon number 5
gene id LOC111192375
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14616723 ~ 14618634 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTAGTTTTTGTACCCAATAACTGTAGTCCATCTTCGTCAAATACATGTTTACATCCGCACTGACCCATAAAACGCTTCGAGAATGATGTAGAGCTGCACAGGCTTCTCCTAGCAAGATTTaacaccagaatgcagctaGCGGCTCAATGCTAGGTAATAGCTAAACTCAGCAGGAACGATCGGAGGGATTTCTGAGTTGAATTAATCAAAAGCTACTGTTTAAGCACAGGATCATCAGGTTTATAAAGATCCCTCCCCATCTCCTAGCAACCAGTGTATTCAGGCTAAACAAGCGTGCACTGAGGGTTAAAGCAGGTGCCATGGTGACCAACTTTCCGCTCCTGTTTGGTCAACTGTAACCTGCTGCACGACAATGCCAAGCACCTGCTTTTACCCACACGGCAACGGACAATGGCCTTCACCTGGTCCTCCTCACCGTCAGCGCAGGCAGGTAGGCTGCACCAACCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48956 lncRNA upstream 26935 14580534 ~ 14589788 (+) True G36382
TU48952 lncRNA upstream 48811 14565953 ~ 14567912 (+) False LOC107197918
TU48946 lncRNA upstream 137401 14478818 ~ 14479322 (+) True G36372
TU48944 lncRNA upstream 154332 14462142 ~ 14462391 (+) True G36370
TU48888 lncRNA upstream 173567 14391304 ~ 14443156 (+) True G36322
TU49037 lncRNA downstream 167416 14786050 ~ 14787301 (+) True G36437
TU49043 lncRNA downstream 174837 14793471 ~ 14794336 (+) True G36442
TU49115 lncRNA downstream 419144 15037778 ~ 15037977 (+) True G36499
TU49121 lncRNA downstream 434408 15053042 ~ 15064113 (+) True G36503
TU49130 lncRNA downstream 459150 15077784 ~ 15081345 (+) True G36510
XM_022669156.1 mRNA upstream 49562 14564925 ~ 14567161 (+) True LOC107197918
XM_007260024.3 mRNA upstream 986709 13525763 ~ 13630014 (+) True ccser2
XM_022669434.1 mRNA downstream 4595 14623229 ~ 14645576 (+) True btbd16
XM_022669164.1 mRNA downstream 33016 14651650 ~ 14701359 (+) False LOC103046321
XM_022669159.1 mRNA downstream 33017 14651651 ~ 14702499 (+) True LOC103046321
XM_022669161.1 mRNA downstream 33017 14651651 ~ 14702499 (+) False LOC103046321
XM_022669162.1 mRNA downstream 33017 14651651 ~ 14701359 (+) False LOC103046321
TU48945 other upstream 153084 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 1913667 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 2050752 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 2245761 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 2814519 11801458 ~ 11802204 (+) True G35903
TU49039 other downstream 170746 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 814197 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 2381748 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 2381748 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 2383806 17002440 ~ 17018884 (+) False sun1

Expression Profile