RNA id: TU49027


Basic Information

Item Value
RNA id TU49027
length 3515
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G36428
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14749553 ~ 14778395 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAAGTCTGGAATACTCAAACAGATGACAAACATAGTTTTACCCATGTTTTTATTCCCTTTCTGATCAAAAGGGCATCAGATACTGAGGAGTAGGAGGAGGAACCAAACATGAGGAGTGCATAAACAAAACGATGGAGAAGGAAATGATAGTAGAAACTGTAGGAAGAGTAGGAACTGTACATTTGTTACTGTAAGTGGAGAATTCTATGGATCCACCAACATTTAATGCCATTTTAACTGGAGAGACATTGAGAGACATGGAGAGACTGGCATCCTTTCATTTCCTCAGTTCATTCTTAAGACAATAAAAAGTAGAGAAAGCATACATTTACGTAAATAATCCTCACTTCTGAAATTACCCACACGAGCATCACTTCAACAACACTGATTAAATCAACCAAATGTCGgcaaggaaataaaaaaaaaacatcctgagTGCCTTTCTGATGTACGCCTACGAAGAACAGAAACAGCACACAGTCAGAAGGCTGAAGTCAGTTCCATGTTTAAAGGCTTGGGacttaataaatgcatttacactaaagaagaagaagaagaagaagaagaagaagaagaaagaggttTCACTTGAGCctatttacactgtttataaACCACTTCATGTGTTCAGTGTctgacatataaaaaaaaaggcaagtcTGAAAGCAGCTGCTAGGGACGGATTGCACTCTGCTCAATTCTTGGGTGGTATGAAATGTGTTGGagatgctgattggctgatgtttGTTTGCATGTTGCAATGTTGATAAAGTGTCCATACTGTCAGGAAAAATCGTACCATACAAGaataatattgtttacataGATACCTACAATATAAATGTGACCTTATGTTATGTTACATGATGCCTGAAGTCATCATGatgcataaaaataatttatcttAAAGGTTTATTCATGCTCGCAATTTAATATGAATACGTGTGAAGCCTTGTGTCTATCTTTGTACTATTTCttatgtattttcttctgtatttgtgcatgttctctaaaaaaaatcatggataTATCATGAATTggatacactgtaaacccagaagttgtttgaactcaaatgatgtaagcctgttttacattaaattggatatttctaaacaattctcaactattttgagttagttgaacactTGTGGGCACAttaaatacattcaaactgagatctttaagttgaaccaacttgtaataagtaataaataagtTTAGTCTATTGttattaacagcttcttttccattggcttctcacaatctatttgcataatgggtgtgtccaacagtttctgacactcaccatcagtgtgtagtggttCCCcctactttagaaataaattaataagttctgctttagttgtaataacttgatattttaatttatgctaactcaagttttcattccctgttacttaaaacatttgagcaaaccagctgcctaaacttaacttatctggttttacagtataacaaaaataaaaagttcaatcaacttcccctttagttgtaataacttgatgttctaagttatgctaacttaagtttttattacccattacttaacttttctAAAGGCAATGGTTTCCTCAAtttctttaagtaaatttaacatatctgggcttacagtgcaGTACCATTAAAAATTTGCTTTATTGGGGGTAGTGTAGCTCAATATAGTGCAAGTGAAATTCAACCACTGTCATACGGACATGATGAACAATAAACATTTtccattataaggcgcatttaaaatcctttaattttcccaaaaatcatcagtgcgccatACAATCCATttcgccttatgtataaatgttaCCTGTCAGGATGTAAAGAGTAcaacagagttatacaggagtttcagtttagttctccagcaccaaggctggagcagtattagcattagccagttatcacactaagtgctagctcttttgccattcagaggtgggtaTTATTGAcccgtagcctgctgctaaccccggctagcactgctagagcagcattagctttagcctcTATTAACCGCATgccactaagcgctagctaggTCTGTCCCCGTTCAGAGttaagtatatcggactgtagtgtGCGcatttatcgtgttaaaacaagctacgtgggatgaactgctagctaatatcaccctggctttcACTCTGAAAACACTCAGGATTTGTCAGTGATTTGAgtgctgttgggtggcatttaaATTACTActtggcttagctttatttagttACCCCTTATCGCCatccagcagcaagacctgctgaattagtaggaaaacatggtgacacccttgttccttactagtgttgcataatgcacctcataatccagtgcgccttatagtgcaaaaaatagagttattatattatagggGGTTTTGTCCCCATTTGTCTCATATATATGCTGTGAAAACACCAACTAAATTATCAACTAAACATCAACTAAAAGGGCTTGTTAATAAGCAGATTACTTGAACTTATTAGTTGTGTTTGGAGAAAAGCGCCAAAatccagggttaagaaactctGAGCACGCTAACATCGCTGTCAAcagaataaaaactaaataaaaacattttctagtCTAGTTCAAAAACTTTTTAGTTTGGCCCCATTTGTGGCACCCAGCCTGGGGGAAAAATGTAGGCTTTGCAACATTTCTCAAAAAAGTTataatagttaaaataaaagttaaaatattttagttttattatcaGGTACCACTTTTTAAGATATGGCCAAATCAGATAACAATTAATGAacataaattacttttttagaaCCACTGAACAGCCTGTATGATGCAAACACTTAGCTTAGATTATGTTTTGAGCAATAAAGTTTGTTCAAATTCAAGAGTTTAAGCATATGTCTTTAAATGAACAGTGAAAGTGAACTGCTATGCTAAAAACAGTTAGCTTTAGCACAAATCTGTCACAATTGATTACAACATACACAATGAAATGACCAGGTCTCACTGGAATGTTGTTAGGTTTTATATTGTTGGACACATGAAATGGTGCGTGTAAATAGGCTGAATGTGAACTCATGTAGTAATGTAGGACTGGAACTGAAGCTTAACCAAAGGAAAAGGATGCAGCAGgatggcaaaaaaaagaaactgtatcAGAGGGTGGGATACTTTAGTAAGGTGGGTTTCAGAGTTTTAAAGGCAGGGAGACATTTACTACACGTGCTAAAACGAGTGCGGCTCCAGACACGCACTCTGTAAAAAGTCAGTGTTCTTTAGTTTTTtcgatgtttttgtttttgtacacACTGAGAACCAGCTCAAGGTAGAGCAGGAGGTCGAGGGGGGGTGAAGAAGGGTCAAGGGTCGATCTCCTCGGGGATGATGGTGAGGATGACGTCCTCGTTTCCCCGCCGGACCACCGTCCGGAGCGATTCGTCCTTCTTGATGCTCGCGCTGACATCGCTGGCTGAGGTGATCCGCTGGCCGTTGATGCTGATGATGACGTCGCTCTCCTGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49012 lncRNA downstream 69450 14704543 ~ 14705231 (-) True G36417
TU48978 lncRNA downstream 204695 14552745 ~ 14569986 (-) True G36396
TU48908 lncRNA downstream 743740 13984417 ~ 14030941 (-) True G36339
TU48899 lncRNA downstream 925444 13848974 ~ 13849237 (-) True G36331
TU48897 lncRNA downstream 932770 13836865 ~ 13841911 (-) True G36330
TU49046 lncRNA upstream 7642 14786037 ~ 14786753 (-) False c4h10orf88
TU49087 lncRNA upstream 54574 14832969 ~ 14877078 (-) True G36477
TU49167 lncRNA upstream 370008 15148403 ~ 15149356 (-) True G36542
TU49176 lncRNA upstream 421427 15199822 ~ 15200037 (-) True G36550
TU49335 lncRNA upstream 604117 15382512 ~ 15454810 (-) True G36632
XM_022669155.1 mRNA downstream 158059 14565938 ~ 14616622 (-) False wapl
XM_022669152.1 mRNA downstream 158059 14565938 ~ 14616622 (-) False wapl
XM_022669154.1 mRNA downstream 159908 14565938 ~ 14614773 (-) True wapl
XM_022669150.1 mRNA downstream 335452 13882457 ~ 14439229 (-) False grid1
XM_007260030.3 mRNA upstream 7557 14785952 ~ 14797212 (-) True c4h10orf88
XM_022669166.1 mRNA upstream 56057 14834452 ~ 14861783 (-) True c4h16orf62
XM_022669169.1 mRNA upstream 262139 15040534 ~ 15085022 (-) True med24
XM_022669170.1 mRNA upstream 316209 15094604 ~ 15115112 (-) True LOC103031644
XM_022669171.1 mRNA upstream 316209 15094604 ~ 15111090 (-) False LOC103031644
trnam-cau_20 other downstream 1574443 13200166 ~ 13200238 (-) True trnam-cau_20
trnam-cau_19 other downstream 1576906 13197702 ~ 13197775 (-) True trnam-cau_19
TU48566 other downstream 2063136 12709808 ~ 12711545 (-) True G36074
trnaq-uug other downstream 2105894 12668716 ~ 12668787 (-) True trnaq-uug
trnaq-cug_2 other downstream 2106774 12667836 ~ 12667907 (-) True trnaq-cug_2
trnal-caa_1 other upstream 173242 14951637 ~ 14951749 (-) True trnal-caa_1
trnal-caa_2 other upstream 173446 14951841 ~ 14951953 (-) True trnal-caa_2
trnal-caa_3 other upstream 173709 14952104 ~ 14952216 (-) True trnal-caa_3
trnal-caa_4 other upstream 173913 14952308 ~ 14952420 (-) True trnal-caa_4
trnal-caa_5 other upstream 174117 14952512 ~ 14952624 (-) True trnal-caa_5

Expression Profile