RNA id: TU49167


Basic Information

Item Value
RNA id TU49167
length 279
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G36542
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15148403 ~ 15149356 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGGGTGGTTTTGTCAGTAATTTTGTGgatttgaaacacgttttaccctgtaaattggttttatctgaatcccactgtaacaatctggcaaccctggtggctcgctgtccgctccgtttcttcggctgtctgttgcttagttGCGAGACCCGCAaagcattttgggacacattcagCTCGCTTAGTAAGCAGTGAAGtttactataaatcatgatgcattatgggagtttttagtgccctcaaaatcacgttcGAATCCCTCCTTATGATTCGGACACT

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49087 lncRNA downstream 271325 14832969 ~ 14877078 (-) True G36477
TU49046 lncRNA downstream 361650 14786037 ~ 14786753 (-) False c4h10orf88
TU49028 lncRNA downstream 370008 14749553 ~ 14778395 (-) False G36428
TU49027 lncRNA downstream 370008 14774681 ~ 14778395 (-) True G36428
TU49012 lncRNA downstream 443172 14704543 ~ 14705231 (-) True G36417
TU49176 lncRNA upstream 50466 15199822 ~ 15200037 (-) True G36550
TU49335 lncRNA upstream 233156 15382512 ~ 15454810 (-) True G36632
TU49314 lncRNA upstream 243655 15393011 ~ 15397037 (-) True G36629
TU49337 lncRNA upstream 258104 15407460 ~ 15412008 (-) True G36634
TU49355 lncRNA upstream 365502 15514858 ~ 15527219 (-) False LOC111192377
XM_022669170.1 mRNA downstream 33291 15094604 ~ 15115112 (-) True LOC103031644
XM_022669171.1 mRNA downstream 37313 15094604 ~ 15111090 (-) False LOC103031644
XM_022669169.1 mRNA downstream 63381 15040534 ~ 15085022 (-) True med24
XM_022669166.1 mRNA downstream 286620 14834452 ~ 14861783 (-) True c4h16orf62
XM_007260030.3 mRNA downstream 351191 14785952 ~ 14797212 (-) True c4h10orf88
XM_007255143.3 mRNA upstream 391744 15541100 ~ 15547570 (-) True psmc5
XM_022669178.1 mRNA upstream 403235 15552591 ~ 15565917 (-) True smarcd2
XM_007255140.3 mRNA upstream 423424 15572780 ~ 15580758 (-) True LOC103026640
XM_022669179.1 mRNA upstream 433269 15582625 ~ 15611422 (-) True LOC103026344
XM_007255139.3 mRNA upstream 433269 15582625 ~ 15607667 (-) False LOC103026344
trnal-caa_19 other downstream 191646 14956645 ~ 14956757 (-) True trnal-caa_19
trnal-caa_18 other downstream 192053 14956238 ~ 14956350 (-) True trnal-caa_18
trnal-caa_17 other downstream 192459 14955832 ~ 14955944 (-) True trnal-caa_17
trnal-caa_16 other downstream 192865 14955426 ~ 14955538 (-) True trnal-caa_16
trnal-cag_9 other downstream 193066 14955227 ~ 14955337 (-) True trnal-cag_9
TU49397 other upstream 606257 15755613 ~ 15769529 (-) False G36677
TU49409 other upstream 606257 15755613 ~ 15769491 (-) False G36677
TU49415 other upstream 606257 15755613 ~ 15769529 (-) False G36677
XR_002649883.1 other upstream 609034 15758390 ~ 15758863 (-) True LOC111192378
TU49443 other upstream 687749 15837105 ~ 15840485 (-) False LOC103023526

Expression Profile