RNA id: TU49220


Basic Information

Item Value
RNA id TU49220
length 208
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G36560
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15376282 ~ 15379928 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcATCTATACTtatacctgagtaatgaatgggaATACATTCATATTCATACGTAGCATAGGAAGAATATTTCAACATTAAAAGTGTCCGGAACTAAGGGATGTTACGACAACCAAAACATCTTATAAAGTAGCCTCTAAATGAGAAGAAAGACccaaatacaaaacacacacacacacactatgtgaagagggagatgTGGAATTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49153 lncRNA upstream 176209 15199822 ~ 15200073 (+) True G36532
TU49145 lncRNA upstream 195204 15177106 ~ 15181078 (+) True G36524
XR_002649903.1 lncRNA upstream 224154 15150171 ~ 15152128 (+) True LOC111192405
TU49132 lncRNA upstream 285906 15086356 ~ 15090376 (+) True G36512
TU49131 lncRNA upstream 292342 15081564 ~ 15083940 (+) True G36511
TU49243 lncRNA downstream 161186 15541114 ~ 15546201 (+) True G36582
TU49244 lncRNA downstream 161186 15541114 ~ 15547526 (+) False G36582
TU49245 lncRNA downstream 164127 15544055 ~ 15547113 (+) False G36582
TU49246 lncRNA downstream 164127 15544055 ~ 15547526 (+) False G36582
TU49251 lncRNA downstream 228164 15608092 ~ 15679320 (+) True G36584
XM_007255166.2 mRNA upstream 240379 15134302 ~ 15135903 (+) True gjd3
XM_007255156.3 mRNA upstream 243029 15116824 ~ 15133253 (+) True top2a
XM_007255159.3 mRNA upstream 340328 15032389 ~ 15035954 (+) True LOC103032173
XM_007255160.3 mRNA upstream 384983 14967880 ~ 14991299 (+) False LOC103032486
XM_022669172.1 mRNA downstream 13087 15393015 ~ 15406356 (+) True LOC103029630
XM_007255149.3 mRNA downstream 27557 15407485 ~ 15423095 (+) True LOC103029312
NM_001291253.1 mRNA downstream 52901 15432829 ~ 15440157 (+) True LOC103028998
XM_007255146.3 mRNA downstream 61639 15441567 ~ 15520594 (+) False LOC103028270
XM_022669173.1 mRNA downstream 61640 15441568 ~ 15520594 (+) True LOC103028270
TU49039 other upstream 585449 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 912643 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 2673226 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 2810311 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 3005320 12366540 ~ 12370962 (+) True G35967
TU49230 other downstream 52903 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 1620454 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 1620454 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 1622512 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 1821569 17201497 ~ 17205033 (+) True phf5a

Expression Profile