RNA id: TU49243


Basic Information

Item Value
RNA id TU49243
length 1480
lncRNA type inter_gene
GC content 0.45
exon number 8
gene id G36582
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15541114 ~ 15547526 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGATAccgtttatttaaaataaatttaggtAACAATTATAAATCAAgtcacaaaagaaaacaaaacaatataggTGAGGGCTGCCAGGCGTTGCTGGAGGCTCTACTTCCAGAGCTTCTTGATGGACATATTTTTCTCGCTGTCTTTCTGCATCACctttgcaacagccatttcaaaGTCTTCCTGGGTGACGTGAACTCTCCTCTCTCGAAGAGCGTACATACCAGCCTCAGTGCAGACACCCTTGACCTCGGCGCCTGAAGCTCCTGGCATTAGCTCTGCAATTTTCCTCAAATTTATTCCACGGGTCAGGTTCATCTTGCGGGAGTGGATCTTCAGAATGTCCAAACGGGCCTCTTCATTAGGAGGGGGAAACTCAATCTTCCTGTCAATGCGTCCAGGTCTGAGCAGAGCAGAGTCCAGAATGTCAATACGGTTAGTGGCCATGATGACCTTAATATTCTTGGTGGCCTCAAATCCATCCAGCTGATTGAGAAGCTCCAGCATGGTCCTCTGCACCTCGCTGTCCCCTCCAGAACCTCCCTCCAGTCGAGAGGAACCAATCGAATCAATCTCATCCATAAAAATGATGGAGGGTGCATGCTCACGGGCCATAACGAACAGTTCACGCACCATACGGGCTCCTCGCCAATGAACTTCTGCACCAGCTCGGAGCCGGACACTCTGATGAATGTGCAGTCTGTGTGGTGAGCCACAGCTCGGGCCAGCAGCGTCTTTCCTGTGCCAGGTGGTCCATACAACAGCACCCCCTTAGGCTGTGCAATTCCAAGGGCCTCAAACAGCTCAGGATGCTTCACAGGCAGCTCGATCACCTCCTTGATCTCTTTGATCTGTTTGTCCAGACCACCGATCATCTCATAAGTGGAATCAGGCACTTTCTCAACCATCATCAAAGAAACCAGTGGGTCCACTTTATTGGGCAGAATCTTGTGCAATGTGTAGCTGTCGTTACGAAGTGCTACACGGCAATTTGGAGTCACCTGTTTGGAACAAAATCACGTTTTTTGTACTtttttttttaggaatcaggaaggtcagcgtgttttcattaacaataagtGATGAGGAGAACGTGACTGAGTGGCAGAGAAGTTTCAAtgctgttctgggaccagtgTAAATAAACTAGGAGACAACAAGATATCCAAATGAAGCGCTGGGAACCTCTCCTCAGATATCCAGCTTATGCATGTTCTACACGGCATAAAGTTGCATTCAGGCCAGAAGAGCTTTCCATCCTCTCTTTTCCTCCGTTTCATCTTCAGAGACTATAGAACACTTGAGGATTGTTTGATCTGTATTTGATACACAAGGATTGTTTGCTGTGTTCATAAAAGACAGAGttaaacaacaaaacataaaacttgATGGTAAAACATCAAATTATAGCAgaagaatttaaatattatagacACTTTAAAACTTCCACATTAAAGGGGtgctaaaaatgtgtttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49220 lncRNA upstream 161186 15376282 ~ 15379928 (+) True G36560
TU49153 lncRNA upstream 341041 15199822 ~ 15200073 (+) True G36532
TU49145 lncRNA upstream 360036 15177106 ~ 15181078 (+) True G36524
XR_002649903.1 lncRNA upstream 388986 15150171 ~ 15152128 (+) True LOC111192405
TU49132 lncRNA upstream 450738 15086356 ~ 15090376 (+) True G36512
TU49251 lncRNA downstream 61891 15608092 ~ 15679320 (+) True G36584
TU49299 lncRNA downstream 202573 15748774 ~ 15774590 (+) True G36618
TU49451 lncRNA downstream 326347 15872548 ~ 15879307 (+) True G36708
TU49449 lncRNA downstream 328213 15874414 ~ 15875884 (+) True G36706
TU49450 lncRNA downstream 336256 15882457 ~ 15885873 (+) True G36707
XM_007255146.3 mRNA upstream 20520 15441567 ~ 15520594 (+) False LOC103028270
XM_022669173.1 mRNA upstream 20520 15441568 ~ 15520594 (+) True LOC103028270
XM_022669174.1 mRNA upstream 20520 15441568 ~ 15520594 (+) False LOC103028270
XM_022669175.1 mRNA upstream 20520 15441568 ~ 15520594 (+) False LOC103028270
XM_007255145.3 mRNA upstream 20520 15472044 ~ 15520594 (+) False LOC103028270
XM_022669181.1 mRNA downstream 75110 15621311 ~ 15672444 (+) True LOC103033971
XM_007255131.3 mRNA downstream 262004 15808205 ~ 15811853 (+) True LOC103023844
XM_007255127.2 mRNA downstream 603637 16149838 ~ 16175195 (+) True rhobtb1
XM_022669188.1 mRNA downstream 603637 16149838 ~ 16175195 (+) False rhobtb1
XM_022669189.1 mRNA downstream 603637 16149838 ~ 16170961 (+) False rhobtb1
TU49230 other upstream 100961 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 750281 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 1077475 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 2838058 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 2975143 12551780 ~ 12565971 (+) True bnip3
TU49796 other downstream 1454181 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 1454181 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 1456239 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 1655296 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 1686678 17232879 ~ 17234550 (+) False cby1

Expression Profile