RNA id: TU49246


Basic Information

Item Value
RNA id TU49246
length 638
lncRNA type inter_gene
GC content 0.50
exon number 6
gene id G36582
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15541114 ~ 15547526 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCCACCTTCTAGTATAAGCACCCACCTTAGGCTGTGCAATTCCAAGGGCCTCAAACAGCTCAGGATGCTTCACAGGCAGCTCGATCACCTCCTTGATCTCTTTGATCTGTTTGTCCAGACCACCGATCATCTCATAAGTGGAATCAGGCACTTTCTCAACCATCATCAAAGAAACCAGTGGGTCCACTTTATTGGGCAGAATCTTGTGCAATGTGTAGCTGTCGTTACGAAGTGCTACACGGCAATTTGGAGTCACATCATTAATGTCAATGTTTTTGTCCACATCCACCACAAACTTGCCCTCAGGATGAACCTTTACTAGGACCTTCTTCTTGTCCATAGCTCGGACCACCTCGCCTACATAGGAGCCCTGCTCCTGAAGCAGCTGCAGTTCCTCCCGCAAGAGACgCTTTGGCATTTAGCTCGTTCCTCTGGGCCTGCAGACGTCTGAGATTCTGGCTTTTTTCATTCACTGTCAACTGTAACTCTTCTATTTTAGACAGATAATACTGCCGGAGGCCTGAGCCACCTTTACTTTCCTCCAACTCCATATGGTCGAGTCCGTCCAGCGCCATTTTCAGCGCAGCGCGCAGTGGCTGTCTGTTTTGTAGAAACTCGACAGCGCCCTCCAGCGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49220 lncRNA upstream 164127 15376282 ~ 15379928 (+) True G36560
TU49153 lncRNA upstream 343982 15199822 ~ 15200073 (+) True G36532
TU49145 lncRNA upstream 362977 15177106 ~ 15181078 (+) True G36524
XR_002649903.1 lncRNA upstream 391927 15150171 ~ 15152128 (+) True LOC111192405
TU49132 lncRNA upstream 453679 15086356 ~ 15090376 (+) True G36512
TU49251 lncRNA downstream 60566 15608092 ~ 15679320 (+) True G36584
TU49299 lncRNA downstream 201248 15748774 ~ 15774590 (+) True G36618
TU49451 lncRNA downstream 325022 15872548 ~ 15879307 (+) True G36708
TU49449 lncRNA downstream 326888 15874414 ~ 15875884 (+) True G36706
TU49450 lncRNA downstream 334931 15882457 ~ 15885873 (+) True G36707
XM_022669174.1 mRNA upstream 23461 15441568 ~ 15520594 (+) False LOC103028270
XM_022669181.1 mRNA downstream 73785 15621311 ~ 15672444 (+) True LOC103033971
XM_007255131.3 mRNA downstream 260679 15808205 ~ 15811853 (+) True LOC103023844
XM_007255127.2 mRNA downstream 602312 16149838 ~ 16175195 (+) True rhobtb1
XM_022669188.1 mRNA downstream 602312 16149838 ~ 16175195 (+) False rhobtb1
XM_022669189.1 mRNA downstream 602312 16149838 ~ 16170961 (+) False rhobtb1
TU49230 other upstream 103902 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 753222 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 1080416 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 2840999 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 2978084 12551780 ~ 12565971 (+) True bnip3
TU49796 other downstream 1452856 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 1452856 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 1454914 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 1653971 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 1685353 17232879 ~ 17234550 (+) False cby1

Expression Profile