RNA id: TU49251


Basic Information

Item Value
RNA id TU49251
length 3192
lncRNA type sense_over
GC content 0.36
exon number 4
gene id G36584
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15608092 ~ 15679320 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgcagaaaatgagaaatggctgaaataagatgcagagctttcagacctcaaataatgcgaagtTCGCAAAGTTCGTAAAAATCAATACttagtggaataatcctgtttttaagcacagctttcatgcatcttggcatgttctcctccaccagtcttacacactgcttttggataacttaatgctacttctggtgcaaagattcaagcagttcagcttggtttgatgacttgtgatcatccatccttctcttgattatattccagaggtttttaatttggcaaaatcatagaagctcataatttttaagtggtctcttattgtttctagagctgtatatatcagCAATGGTTAAATTTTCTGCTTTGGCCTGAGAGGCTTTAACATTATATTTTGGTGGTGGTTTATCCTTCCCGATCCTATGAGAGGTGGAACCTTCTCAGAAAGCATGTTACAAGGCTTTCCCGTCCCGGTGGTCCAGCCGAAAACTGAGAAGCATCTCTTTTCCTTCTTGTTTTTTAACAAGAAGGTAAAAGGATACTGGTCACTACCTGCTCAGGGTCATCACCATGACAAAAGAGCTTGGTCATGGAGTCCGTGACCTAGATAGAGtgcaagaAACAAGCACAACTACAAACTGATTAAAGTGAACTGGTGTCCCATATAAGCAATTCAGGTTAATCTAAAGTGACTTAAATGAAGGCTGTAATGAGCGTAAGAAACAAGACACCGTCGAATTCAGCCAAAAAGCAAAATATGGAATACATCTCTCCATTTTTCTCTGTCAGTCTGGAATAAAAGGTGGGGGTAGGGTGGGCTGGTGGGCCGTGAAGGCCTGTGAAAGGGTGGCATTAACCACTCTTGACTGGTTAATGGCGGTACAGCGTAGATGACGAAGGTACAAAGCGCGGCTGGACGAAAAAGAAAACGAATTATCCAGGGGTCTGTATTTTCTCAGGGGTCATATATGTCACACAGCATTTCCAAATGTCACGTGTCTTGTCTCTCCAAAGATTACACACGAGGCTgcataatactgaaaaaaataaagggaaaatcTGACACTTTGTTGTTAAAGactgaagtgaaataaatgatgctcCTGTTATGTGACTATTACACATGCGCACAATGCAATGTtgatgctgaaacaatatacagtatatcttcATGCTCCATACAACTGAGGCTTTATTAAGAGTTACGGATTGAGGAACCACTAGttgagcaaaaaacaaaaattcttTACCTAAGTTTATATATTAAGATGATATTTCACagtggtttggtgtgaaatggttTAAGCAATGCAAACATGACCAATTTACTCACAAAACCACCAGTGATAAATCAGGAAAAAGACAAGTTTTTTTTGAGGACTATTTTTACCATTCTATAAACTTCACCAttcatctgtttattgttaaagaAGAACATTGTAAGCTAAATATGTAtcataaaaatagtaatagtaaaacaatatttaagtcACCATAAATGTGATTTTCCATTCACTTTGTACACTCTATAACAGAGCATTTCACACCAACCTGATGAATAATTTCTGAATGATGAAACTGATGAATTTCCAAGTAGTTAACTTTCTTTTTTACTAGTGCATAGCTAACATTGGGGTCACCATTAGACAAACACACAATGGTTAGCTACATATTAACATCCTTATCCTCACTCATGTTTTAAGTCTTGGTTTCTAACATATATCTTTTAAATATTCAACTGCCAGTGCTATTGGGTTCACTGCCGTTTGTTTAATGAGTATTCTAGCTTAAAACTAGCTATGtagatttttttgcatgttttgcaaGATTTTAGTAGAGTAGCTTTTAGTCTCATTAACTTTATgattttgtatcatttttagctttttgtttATCACAGATTTCTTAGTACAATTGCCCAGCACCAATGTAAAGGATAAGAAATAGAAGCAACATTAACTTCTAACAGAACTATATAATGTTCTTTATAGTGTTTTATCTTTTGTTTAAACCAGATATCTCACTTCTCCCATGGCTTCTGTGATTCTCACACATGTTGATAATGGCTTGGTACTATATACTTGAAATTAGCCGTTTCAGGGGAAAAATGTctactttacatttaaaaaactgttaGAAACCACCACAGCACCACTATATGGGGTGAGTAGGTattcattttacacaattaCTTTTGGCTGGAGTTCCCCTTTAAAGATACTGTAGATGTGTAGCATATGGTACAATATAAATTCAATCATGTGATGTAGCATTCTGCCATCTTAGGAAAAAGCCAGGTTTTACAGAGGATCTTTGACAGTAATACTGGGATATGCAAACACTGTCTAGTTTGTAATGAAGGGGTTCCTCCCTTTTTACAGAGGGGGGTGTTGTAATTTTTCTTATTAAGAagttatatgtttaatattattttttattatctttttttaccAGATTAGATTGTAGCacttaaatgtgtaaatatgtattCAGTATCACAAGTGCCTGAGAGAAATATCAGGTCTATGTTGTTCTATTCTTTCTGTTTACCTTGtgttaataataatctgttgtttttttatgttactgTTTTGGCATGTACTCCTAAGTGAGACTGGCCAGTGTTAGGCCACGATCATTCCTGTTCTGAACGCTGTAATCAGTCCTCTCCCAACCTTTGGACAATTTGCCATCTTTTTCCAATatttgttttgtgcttttgtttgtttttgtcaagTTTTTCTCGAATGTcttaatacattaatactgtTGGATATCGCAAGGGCCTAGTGTCCACACAGAGGTCTGCAAAAGGGCACACTGCTTTCTGACAATCATTCAAAAAACCTGTATGCAAAAGGTTACGTATCCACACAAATGAAAAAGGGTACAAAGGACAGGTGGGTTGAGCTGAAGAAATGGAATGAAATGTTGAATCTTGCACTCAGGAGAAGTAGCATGATTGAAaagggatggagagatggacaggtcaaaaaaaaaggctggaggtggaagagaagaagaaagatcTCAAGAAAGTACAATGtacaaactgaaaaaataaaaacgtgaATGTTCCTTGTATTTACTAATATGTACACTGTATCATATTAATGTGAATTTGCTAGAATTCCTAAATCTGGTTCGATGcaattataaactattaaaaccatgaaagtGAATAAACGCATTCA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49244 lncRNA upstream 60566 15541114 ~ 15547526 (+) False G36582
TU49246 lncRNA upstream 60566 15544055 ~ 15547526 (+) False G36582
TU49245 lncRNA upstream 60979 15544055 ~ 15547113 (+) False G36582
TU49243 lncRNA upstream 61891 15541114 ~ 15546201 (+) True G36582
TU49220 lncRNA upstream 228164 15376282 ~ 15379928 (+) True G36560
TU49299 lncRNA downstream 69454 15748774 ~ 15774590 (+) True G36618
TU49451 lncRNA downstream 193228 15872548 ~ 15879307 (+) True G36708
TU49449 lncRNA downstream 195094 15874414 ~ 15875884 (+) True G36706
TU49450 lncRNA downstream 203137 15882457 ~ 15885873 (+) True G36707
TU49448 lncRNA downstream 217861 15897181 ~ 15898165 (+) True G36705
XM_022669174.1 mRNA upstream 87498 15441568 ~ 15520594 (+) False LOC103028270
XM_007255131.3 mRNA downstream 128885 15808205 ~ 15811853 (+) True LOC103023844
XM_007255127.2 mRNA downstream 470518 16149838 ~ 16175195 (+) True rhobtb1
XM_022669188.1 mRNA downstream 470518 16149838 ~ 16175195 (+) False rhobtb1
XM_022669189.1 mRNA downstream 470518 16149838 ~ 16170961 (+) False rhobtb1
XM_022669190.1 mRNA downstream 477026 16156346 ~ 16175195 (+) False rhobtb1
TU49230 other upstream 167939 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 817259 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 1144453 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 2905036 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 3042121 12551780 ~ 12565971 (+) True bnip3
TU49796 other downstream 1321062 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 1321062 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 1323120 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 1522177 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 1553559 17232879 ~ 17234550 (+) False cby1

Expression Profile