RNA id: TU49335


Basic Information

Item Value
RNA id TU49335
length 707
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G36632
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15382512 ~ 15454810 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaagaacaagaaaaaaaaaaaaaaaactaaaacaaaacagaagaaaaattcacactggatTCTCAGAGTCTGTATGCTGTTTGTCCTCTTAgtcctttcacacacacacacacacacacacacttctcctcTTTGCAGGTCTTTGCACTCTTGGGGTTCTTGGACCCCTAGAATTGCCATTTTGTCCTCACACCCACACTTTCCCTCTTGCTCCTGCTTCCGTCCAGCGATGCCGGGCACTCCTCCCTCCGTCCACTGGATAAGCCTTTCAGCCTTCCATCTCTCACGTGAGCAGACAGAGAAGAGGGAGAAACTGAgagggatagaaagagagagatgaaggacATGGCGCCGGCCAGGAGGAGGACAGAGGGAGAGCAGGAGGGAggaaatgggggaaaaaaaaaagctccactCCGGTCTGGCTCAGGCCAGTCAGCATGTGTGGGGTGTGTTTGAGGGGACACAGTAGTCGGTAGGCGGTTGTTGCCGCGGCGACAGCGTTGGTCAGGGCGAGTGTGTCGGTGGGCTGCTTTGGGCGGAGCTCGGGGAGAGGGAGGGACTGCAGCTGCCAGGCGGAGCTCCGGCGGGACGAGACGAGGCTCCACTGCCTGAGGTCTCCAGACCCTCGGAATTCTCCAGCATCTCCTGGATCAGAGGCGGCATGGAGCCAGGAATTTCCATCTTCAGAGTGATCACACGCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49176 lncRNA downstream 182475 15199822 ~ 15200037 (-) True G36550
TU49167 lncRNA downstream 233156 15148403 ~ 15149356 (-) True G36542
TU49087 lncRNA downstream 505434 14832969 ~ 14877078 (-) True G36477
TU49046 lncRNA downstream 595759 14786037 ~ 14786753 (-) False c4h10orf88
TU49028 lncRNA downstream 604117 14749553 ~ 14778395 (-) False G36428
TU49355 lncRNA upstream 60048 15514858 ~ 15527219 (-) False LOC111192377
TU49356 lncRNA upstream 60048 15514858 ~ 15526474 (-) True LOC111192377
XR_002649882.1 lncRNA upstream 61172 15515982 ~ 15527297 (-) False LOC111192377
XR_002649881.1 lncRNA upstream 61172 15515982 ~ 15527100 (-) False LOC111192377
TU49365 lncRNA upstream 94069 15548879 ~ 15549079 (-) True G36657
XM_022669170.1 mRNA downstream 267400 15094604 ~ 15115112 (-) True LOC103031644
XM_022669171.1 mRNA downstream 271422 15094604 ~ 15111090 (-) False LOC103031644
XM_022669169.1 mRNA downstream 297490 15040534 ~ 15085022 (-) True med24
XM_022669166.1 mRNA downstream 520729 14834452 ~ 14861783 (-) True c4h16orf62
XM_007260030.3 mRNA downstream 585300 14785952 ~ 14797212 (-) True c4h10orf88
XM_007255143.3 mRNA upstream 86290 15541100 ~ 15547570 (-) True psmc5
XM_022669178.1 mRNA upstream 97781 15552591 ~ 15565917 (-) True smarcd2
XM_007255140.3 mRNA upstream 117970 15572780 ~ 15580758 (-) True LOC103026640
XM_022669179.1 mRNA upstream 127815 15582625 ~ 15611422 (-) True LOC103026344
XM_007255139.3 mRNA upstream 127815 15582625 ~ 15607667 (-) False LOC103026344
trnal-caa_19 other downstream 425755 14956645 ~ 14956757 (-) True trnal-caa_19
trnal-caa_18 other downstream 426162 14956238 ~ 14956350 (-) True trnal-caa_18
trnal-caa_17 other downstream 426568 14955832 ~ 14955944 (-) True trnal-caa_17
trnal-caa_16 other downstream 426974 14955426 ~ 14955538 (-) True trnal-caa_16
trnal-cag_9 other downstream 427175 14955227 ~ 14955337 (-) True trnal-cag_9
TU49397 other upstream 300803 15755613 ~ 15769529 (-) False G36677
TU49409 other upstream 300803 15755613 ~ 15769491 (-) False G36677
TU49415 other upstream 300803 15755613 ~ 15769529 (-) False G36677
XR_002649883.1 other upstream 303580 15758390 ~ 15758863 (-) True LOC111192378
TU49443 other upstream 382295 15837105 ~ 15840485 (-) False LOC103023526

Expression Profile