RNA id: TU49355


Basic Information

Item Value
RNA id TU49355
length 1472
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id LOC111192377
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15514858 ~ 15527297 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCcggattcttgttaggctggaggggaaGGGTGGAGTGTCAGGAGATGGCAGCACAAGGTGATCAAACAAACCCACCATTGTCTTTAAACTGTAGACCTGCAGGAGGCAGAGACGGACACACGGGAGGGACGTGAACATTTCAACTCCAAACACTGTGTACTTCAAAGTCCGGAGCTTCAATGAACACAACATACGGGAGAAACTCTGATGTCCGCAAGACTTTGAGGGCCTGCCAGAGAACAAACCCAATATTACATAGGGAACAGCACCTGTGGGTTGACGTCCAGAATGCAGATCTTTCCCGAGTCCACAACCTCATGGATGGAGTTGATCTTGGTGCCGTACAGGTTGCCATCATACTCTCCATGTTCCAGAAAACGACCGTTTTTAATGTCTGCCTCCATTTCACTTCTTGACATAAAAAGATACATCTGCCCTTCCTTCTCGTCCACTTTTGGTTTGCGAGACGTGTCTGCAGATATATCCAGAGAGGAAATAATCAGTGTTAGATAAGGTGCAGGATAAGCACAATGCTCTGCAAGATGTGTGCGTGCATTTGTGTGTTCTTACAGGGTGTGGTGGTGCCATAGCGGTGCGGTTCTGACACAAGCAGTTTGTTCTTCAGGCTGCGACGTCCCACTCCCTGAGCTCCAATCAGCACCAGAGTCTTTCTCCGGAATGGTGGAACCTTGGCCACTTCTTCGTAGATCCGAAGCTCATGCCTGTCAAACTCTGGGAACATAAATACACCTTGCTCTGGATCAAAACCACACTGCTTGCTGATTTTATTGGTCTCTATATTAAGTTTTTGGTAAAAATAGCAACACTTTATTCACAATCAAGTTTAGTGGCAAGCTAGGGTCCCATTCACCAGCTAGGCATGCAAACCACTATAAGGGTATCTGTAGATCctttaaagtaatatatttgttttctttacttaaaaaaaaaaaaaaagacagtggcTTTAATCCATCTCTCAGAATTTTAGACTTTAAGGTAAGTATGAAGAAAAATAGAAGTCCTGGGGTTACACTAATTTTCCATAGGACCCTGTTGTCTTTGTAGAAACGATTCActtttttgtgcaaaactgttcatttatgttttttgaaataTTAGTTCATCAGAAAATACAGGAATAATGAAGTCATGCTTTTAGTCATTGCAAAAGTGGTCTTACAAAGAATTTTTCAATTGCTGCAGATACCCAGTTTACTCCAGTTTGTAGTCTATTTTATaccaacattaataaaaacagtattcCTCTGGTTATTAGCACATGGACACTTTCGTTTGGGTGGAAACTGATGAGACATAAGACAGAAAAACGAGGACAAGGGAAGCTGCATCACAGTGTTAACATTGTCAACCAGATTTCTCACACAGGCGGCACAAACAGGCAGCTCAAAGTTAATGACACTGGGGAGAATGCGgggaaaaaagacagagagatggagcaGACAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49335 lncRNA downstream 60048 15382512 ~ 15454810 (-) True G36632
TU49337 lncRNA downstream 102850 15407460 ~ 15412008 (-) True G36634
TU49314 lncRNA downstream 117821 15393011 ~ 15397037 (-) True G36629
TU49176 lncRNA downstream 314821 15199822 ~ 15200037 (-) True G36550
TU49167 lncRNA downstream 365502 15148403 ~ 15149356 (-) True G36542
TU49365 lncRNA upstream 21660 15548879 ~ 15549079 (-) True G36657
TU49375 lncRNA upstream 80872 15608091 ~ 15679306 (-) False G36664
TU49374 lncRNA upstream 146564 15673783 ~ 15679306 (-) True G36664
TU49403 lncRNA upstream 220181 15747400 ~ 15761183 (-) True G36677
TU49413 lncRNA upstream 228394 15755613 ~ 15761608 (-) False G36677
XM_022669170.1 mRNA downstream 399746 15094604 ~ 15115112 (-) True LOC103031644
XM_022669171.1 mRNA downstream 403768 15094604 ~ 15111090 (-) False LOC103031644
XM_022669169.1 mRNA downstream 429836 15040534 ~ 15085022 (-) True med24
XM_022669166.1 mRNA downstream 653075 14834452 ~ 14861783 (-) True c4h16orf62
XM_007260030.3 mRNA downstream 717646 14785952 ~ 14797212 (-) True c4h10orf88
XM_007255143.3 mRNA upstream 13881 15541100 ~ 15547570 (-) True psmc5
XM_022669178.1 mRNA upstream 25372 15552591 ~ 15565917 (-) True smarcd2
XM_007255140.3 mRNA upstream 45561 15572780 ~ 15580758 (-) True LOC103026640
XM_022669179.1 mRNA upstream 55406 15582625 ~ 15611422 (-) True LOC103026344
XM_007255139.3 mRNA upstream 55406 15582625 ~ 15607667 (-) False LOC103026344
trnal-caa_19 other downstream 558101 14956645 ~ 14956757 (-) True trnal-caa_19
trnal-caa_18 other downstream 558508 14956238 ~ 14956350 (-) True trnal-caa_18
trnal-caa_17 other downstream 558914 14955832 ~ 14955944 (-) True trnal-caa_17
trnal-caa_16 other downstream 559320 14955426 ~ 14955538 (-) True trnal-caa_16
trnal-cag_9 other downstream 559521 14955227 ~ 14955337 (-) True trnal-cag_9
TU49397 other upstream 228394 15755613 ~ 15769529 (-) False G36677
TU49409 other upstream 228394 15755613 ~ 15769491 (-) False G36677
TU49415 other upstream 228394 15755613 ~ 15769529 (-) False G36677
XR_002649883.1 other upstream 231171 15758390 ~ 15758863 (-) True LOC111192378
TU49443 other upstream 309886 15837105 ~ 15840485 (-) False LOC103023526

Expression Profile