RNA id: TU49449


Basic Information

Item Value
RNA id TU49449
length 1451
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G36706
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15874414 ~ 15875884 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTATGGTGTGTCATACGTTTGTTATTGGATCGATCAATGAATGCCTGAAGGAGATCTCTTCTGAGTTCTCAACATAAGGAAAGATTTCACCAAACCCCAAAGAAAAATGCCCCATTGAGACCACAGCAGCCTTGAAACCTATTTAAACACTGCTAGAATGATTACAAATAATTGGCTTGGGGAAAGACCTTTACATCTCAGAGCCAATACATATAAGAACAGTTAAACGTTTACAGCGAGCCAGTCGACATGATACAATCGCCCGATCTCTCCTGCTCCGGGCCCGTCTGTGACTGCATAGCATAGGAAACCTTTAGCTGCGTGTGGGGACACAGTGAATCCTTACAAAGCAATACATGAATCGTGTCCATTCCCTCTGTGTGAGTCTGACAGTGCAGTGGTGTGATTAGAAAACAAGGTTAGTGACAAACAGCAGGGCTATGAGTGTGCACACAGCCTGAAAGTTGTTCACTTCTCTGGTTATGTGGCTTAAAAAGAAATCAGAAATAAGGTGAATCACATGCATCAAAATATTAGTACTCTGAGGAAACTTCAAAACAGAACTAGAGCAACGCCCATGTTCGCAGTCATTATTGAGAGGTGCagtaaattcaaaataaatgttctgCTGTTAAAATCAAGCAAGCCTGTTTTcatgtaaaaacagtttttctgtaaataattacacaaatacatgtgaagttacACCCAAGCGTTTCCTAAAAGTCGAAATCAGCATCAGCAtttcattccattccattcattCTCAAATCTCTCTTGCCAGTGCATTCACAATTGTGTACGTATCATTAGAATTTATACAGTTCTGATTTATGTACAAGATCTCCaaaaacagcattatacagCTTGACGCTATGGGTCCgagaagaagaaaatgtaaGGCGAGTGGAGAAGGTGATTAAAAAAAGTGTCCCTAGCTTTCTGTCAGTCCAcgatgctctttttttttaccatcttTGGTCACGGAATTGCTTGGGCGCCACCAGTGTTTGTCTGATCGCCAGCACTCCTCCTCCATTTAGCGCAGAAGAAGCTTCGCACCACCAGCGGTCTCGCGGCACCGTCCGGATGTcctgcgccactgactgaaagaatgagttttttttttttcatgctcaTGCGAAATCAAAAAAGGTCCTCTTCCAGAAAACCATGCGTTTATGTGAAAGCTGCACACGATTCCCCGTTCACTGATCTTCTGCCATTGCGTTTCCAGTGATCTCATTCCCAGGAAAACAATTACGAAACAAGTGCACATCTGTAAAGAAGAAAACATAAAGGTTCATTTacaaaaatggtttaaaattgcaactagcatatttttcaattctttaattttctcaaaaatcatcagtacACCTTATAATAATTCTaccggtcaggttgtaaggaacagtaaagtcactccactgaagtgcagcattataaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49299 lncRNA upstream 99824 15748774 ~ 15774590 (+) True G36618
TU49251 lncRNA upstream 195094 15608092 ~ 15679320 (+) True G36584
TU49244 lncRNA upstream 326888 15541114 ~ 15547526 (+) False G36582
TU49450 lncRNA downstream 6573 15882457 ~ 15885873 (+) True G36707
TU49448 lncRNA downstream 21297 15897181 ~ 15898165 (+) True G36705
TU49464 lncRNA downstream 46888 15922772 ~ 15924714 (+) True G36721
TU49465 lncRNA downstream 48901 15924785 ~ 15925847 (+) True G36722
TU49574 lncRNA downstream 335161 16211045 ~ 16211697 (+) True G36783
XM_007255131.3 mRNA upstream 62561 15808205 ~ 15811853 (+) True LOC103023844
XM_022669181.1 mRNA upstream 201970 15621311 ~ 15672444 (+) True LOC103033971
XM_007255145.3 mRNA upstream 353820 15472044 ~ 15520594 (+) False LOC103028270
XM_007255127.2 mRNA downstream 273954 16149838 ~ 16175195 (+) True rhobtb1
XM_022669188.1 mRNA downstream 273954 16149838 ~ 16175195 (+) False rhobtb1
XM_022669189.1 mRNA downstream 273954 16149838 ~ 16170961 (+) False rhobtb1
XM_022669190.1 mRNA downstream 280462 16156346 ~ 16175195 (+) False rhobtb1
XM_022669191.1 mRNA downstream 285369 16161253 ~ 16175195 (+) False rhobtb1
TU49230 other upstream 434261 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 1083581 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 1410775 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 3171358 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 3308443 12551780 ~ 12565971 (+) True bnip3
TU49796 other downstream 1124498 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 1124498 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 1126556 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 1325613 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 1356995 17232879 ~ 17234550 (+) False cby1

Expression Profile