RNA id: TU49465


Basic Information

Item Value
RNA id TU49465
length 1043
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G36722
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15924785 ~ 15925847 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGAGTGAGTCAGACTGAAAGAAGCAGAGCAGTGGGTGTTTGTTCAGTCTAAAGGCTCGGGGTGAGCAAACACTCTACCAGGGTTAGAACAAGCTACAGCAAgtgcacactacacactatagagagagagagagagagagagagagagagattaaaggGGGAGGGTTGCCCAGCATTCCAGTAGTGACAATGCTTCCCAGTCCCCTGCTGCTTATTACCACGGCAACCCCTCCCCATCAAACCAGTAGTGCTGTACCataactgacacacacacacacacacacacaattctagCCCTATACTATGTATATGCCTTATAAAAGAATCCCTCATCCCACAGAAACACATACCATTGACTAGCCCTCTCAATAGCCTTTCTTTTCAACCAAAGACTCCACAGAGTCAGCAAAACTTTTCAGAGCGAGTGAACAGTTCTTTCTAagcacccaacacacacacacaccacacacacacagattagcTTTCCCTCGTTTGGCCCTGCACTGCTAAATCAGGACACAGCAGCCAGCAAACAAGCTCAAACCCGAATCCAGCAACAGCATGAACAACTTCACTCTGTCCAACTTCTTATGTGTAACTTCGCTTACACATCTGAGTCGCCATGACCCTCCTTCTGTAAGATCCTCCACTGTTTCAACAGGTTTGTGATTCCCCTCCTTCTCTCTTCACTCCATGCGTCCCCCAGAACAATACGTCACTCCCACTGGGACAATCCAAATCCATGCAATCAGATCAGATCAAAAATCCACAGGGTTTTGCGTCCACATGTTCCTCCCCTGTAACTTCCCTGCACGGACCAGCAGCACCTGAAACCACTCCAGCCACTCCTCCTGCTGCACTgagctcactctctctctctctctctctctctctctctcttcactctttcacacacacacacacaggcatgggAACACTCCCCCCAAACTAGTGACCAGAGCTCAGGCAGTGCGGGAGTCCACCGCTGACTGAGTTCACAGCAGTGGCGGGATAAAGCTCCGGGACTCTCCAGAAACACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49464 lncRNA upstream 71 15922772 ~ 15924714 (+) True G36721
TU49448 lncRNA upstream 26620 15897181 ~ 15898165 (+) True G36705
TU49450 lncRNA upstream 38912 15882457 ~ 15885873 (+) True G36707
TU49451 lncRNA upstream 45478 15872548 ~ 15879307 (+) True G36708
TU49449 lncRNA upstream 48901 15874414 ~ 15875884 (+) True G36706
TU49574 lncRNA downstream 285198 16211045 ~ 16211697 (+) True G36783
TU49583 lncRNA downstream 287943 16213790 ~ 16214822 (+) False cabcoco1
XR_002649884.1 lncRNA downstream 603303 16529150 ~ 16540014 (+) True LOC111192379
TU49658 lncRNA downstream 615137 16540984 ~ 16569392 (+) True G36852
TU49716 lncRNA downstream 807765 16733612 ~ 16791256 (+) False G36899
XM_007255131.3 mRNA upstream 112932 15808205 ~ 15811853 (+) True LOC103023844
XM_022669181.1 mRNA upstream 252341 15621311 ~ 15672444 (+) True LOC103033971
XM_007255145.3 mRNA upstream 404191 15472044 ~ 15520594 (+) False LOC103028270
XM_007255127.2 mRNA downstream 223991 16149838 ~ 16175195 (+) True rhobtb1
XM_022669188.1 mRNA downstream 223991 16149838 ~ 16175195 (+) False rhobtb1
XM_022669189.1 mRNA downstream 223991 16149838 ~ 16170961 (+) False rhobtb1
XM_022669190.1 mRNA downstream 230499 16156346 ~ 16175195 (+) False rhobtb1
XM_022669191.1 mRNA downstream 235406 16161253 ~ 16175195 (+) False rhobtb1
TU49230 other upstream 484632 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 1133952 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 1461146 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 3221729 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 3358814 12551780 ~ 12565971 (+) True bnip3
TU49796 other downstream 1074535 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 1074535 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 1076593 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 1275650 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 1307032 17232879 ~ 17234550 (+) False cby1

Expression Profile