RNA id: TU49574


Basic Information

Item Value
RNA id TU49574
length 340
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G36783
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16211045 ~ 16211697 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCAAGAATGCTATAGAAAAAGGCAGTCTATCCTCATCACTTTCTGAAGATGTGGAGTTAAAGAAGACCAGAACCAGGAGAAGGCAGAGGTGGTGGCGGTGGTGACTACAAAATACTGAGTTGCAGTTTTGAGgactacctttttttttttttttttccctccccctTCCTTCCCTGAACTGAAGTTTAAcacatgctttttttaagtgtataaaGGAAATGTAATCTGTTACTGTACTTAatgatttagtttttgtttaaagTTGTGTGTATGCTTAAGTACATTTTAAGGCAAACAGTTGAAGTAATTTGCTGAACTTTGGGTTTACTTTGAGTGTct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49465 lncRNA upstream 285198 15924785 ~ 15925847 (+) True G36722
TU49464 lncRNA upstream 286331 15922772 ~ 15924714 (+) True G36721
TU49448 lncRNA upstream 312880 15897181 ~ 15898165 (+) True G36705
TU49450 lncRNA upstream 325172 15882457 ~ 15885873 (+) True G36707
TU49451 lncRNA upstream 331738 15872548 ~ 15879307 (+) True G36708
TU49583 lncRNA downstream 2093 16213790 ~ 16214822 (+) False cabcoco1
XR_002649884.1 lncRNA downstream 317453 16529150 ~ 16540014 (+) True LOC111192379
TU49658 lncRNA downstream 329287 16540984 ~ 16569392 (+) True G36852
TU49716 lncRNA downstream 521915 16733612 ~ 16791256 (+) False G36899
TU49715 lncRNA downstream 578973 16790670 ~ 16792600 (+) True G36899
XM_007255127.2 mRNA upstream 35850 16149838 ~ 16175195 (+) True rhobtb1
XM_022669188.1 mRNA upstream 35850 16149838 ~ 16175195 (+) False rhobtb1
XM_022669190.1 mRNA upstream 35850 16156346 ~ 16175195 (+) False rhobtb1
XM_022669191.1 mRNA upstream 35850 16161253 ~ 16175195 (+) False rhobtb1
XM_022669189.1 mRNA upstream 40084 16149838 ~ 16170961 (+) False rhobtb1
XM_022669194.1 mRNA downstream 2102 16213799 ~ 16233839 (+) False cabcoco1
XM_022669193.1 mRNA downstream 2258 16213955 ~ 16233839 (+) True cabcoco1
XM_022669197.1 mRNA downstream 2258 16213955 ~ 16233839 (+) False cabcoco1
XM_022669195.1 mRNA downstream 2258 16213955 ~ 16233839 (+) False cabcoco1
XM_022669196.1 mRNA downstream 2258 16213955 ~ 16233839 (+) False cabcoco1
TU49230 other upstream 770892 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 1420212 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 1747406 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 3507989 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 3645074 12551780 ~ 12565971 (+) True bnip3
TU49796 other downstream 788685 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 788685 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 790743 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 989800 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 1021182 17232879 ~ 17234550 (+) False cby1

Expression Profile