RNA id: XM_022669197.1


Basic Information

Item Value
RNA id XM_022669197.1
length 2179
RNA type mRNA
GC content 0.41
exon number 11
gene id cabcoco1
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16213790 ~ 16233839 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaaaCCTTTTAAATGCAAGAAACCAATCCAGGCCTTGCAAAGAGAGCATTGAATGGGGGTCGGGGAAAGTGGAACCTGAAGTAAAATGACAGtccatcttcctcctcttccaAAGAGGTGGAGTTTAACAAGACCAGGACCAGGAGGAGAGGGTGTTTGTGGTGGCAGCGACCACAAAATATCGAGTTGCAGTTTCTCAGGATTGTTTTTATTGAACTGAACCCAACACATGCATTTAagtgtaaaacatttatataaagtaaatgtaattggttactgtatttaacttttttttcttgtactgTGTAAAGTTGTAGGAGTGCTTATGCTTGAGTACATTTGAAAGCAAATACTGTTGTACTTAAGTGAATTTCTGAAGGCAGGACATTGAGTGTACTTTAAGTATCTCCACTTAAACGCCTCCTCATCTGTCAGTCATTCCGCGTGGTCCTGCCTCCAGTTACCTGGGCAACAGGAATAGTATTCAACATGTCTGGACGcgacagagaaagagggagtgagagaagcGCAGAGCCTGCCTGAGATAAGAGTTTTTCTACCAGCTAAACCCGCTCTACATGTGGTGAACAAACCCATCAAGATGTTCCTTGAGTGGACACTTCTACCACATGGTGAAATTGCTGTGCTACTGAAGCTCTCAGCGGACGATGTCCAGTTGAAATTTGAGGACatattctgtttaaaaaaacatcagacaTGCTTGAAGGAGGCAGCCCTGTTAGACTACTTTGTTGGAGGATTTTGGTGGGCCAAAGAGATGAACTTCACCTGTCAGCAAAGCTCATTTATCATGGCTCTTTTACAACTGTTACTCGACAACATAAAAGTTCACTCTGTTTCAGACAAGCAGATGCCCTTTGCTGAGAATTTCAAGGCGTTTACCCAGAACCTGCTCGCAACCAGAATGTCATCATCAGACACTGCTGTTAATCCGTTATTTGATGTGGATCAAATCAAATCCATTACGGATTACTTCAAGAGCAGtCTTTTCCAGCACTACAGACTATATCAGTTCCTCTTCACTCAGCCGAGAGAGGAGATGATCCTTAGAATGGAGAGAAGCATTGACGTGGCAAATTCAGCTGATTTCGCTGCTCCCCTGGAGGAAGGCATGCCTCCTGAACTGGACGACATCGGCCTGGCCCCCTCCCCTGCTGCTTCTCCCCCTCAGGGGAAGGAAGAATGTCTAATAAAGAATGAAGAAGAACCTAAAGAATATCAACAGGGGGAAATACACGAAATCCCAGAAGACTATGGCGTAGAAGATGTCCAAGAAATGCTTGGAGATGTGACCAAAGAGATGCTAGCTAAACTTCAGGCCGACTTCACAGAGCGGCTGCGCATTCTCGAGGACTCCTACGTCTCCAGGTTTGAGTTATGTCAGTCCCTGCAGTGTTGACAGTTAACTCGAAGACATTTCTCTCAGAAAGACGTTTGTTCTTAAACAGCCAAGGTAAAATGCTGGAGCTAGAATATCCCAGCTTTAACAGCCAGCGAGCAAACGGAATATCTAATTGAGTGGTTTGTATAATGTTTGCGTGGAGCTTTTCCCACAAGTCATTAGCTGTCTGAAAGCAGCCCAGCACTATGGCAACGCAATGTAACTCAGAGGCTAAATAGCTGAGTTGCCATATAAAGTGATGTATTATTAAAGCTGAATAGTGGCTTTTCCAcagcatttgaaaaaaaaatccacttacAACTATAAATATACACTGCAGTGTATCGCAAAAAAATGCTGATAAAatatttctccctttctctctgctGATGCCGTTTCCccccattttttatttatgcaataCTTTTACATGTCCAAGCATTTCGTCACGCCCATATGCTCCCCACTTTACCTTAAGGGCACATTAACAGTAGCGTTATATAATTTTGTCTTATTATATTACACGCATTAGAATTATTATAATGCAGAGGGGACCAAAGCTTTGAGACCGCAAGAAATTTTTTTAGCcttctttgatttttatttttttaagtagttgtATAGTTAATAGTTATATCTTATTATATACAATAGGCTTCATGTTTATATGAAATATTcatgttttgcctttttttaacaATTCATTGCAACGTGTTTGTATTAGAAATTAAATCAGTGTAACAATTTGACTGAAAATAgagtgtttgaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49574 lncRNA upstream 2258 16211045 ~ 16211697 (+) True G36783
TU49465 lncRNA upstream 288108 15924785 ~ 15925847 (+) True G36722
TU49464 lncRNA upstream 289241 15922772 ~ 15924714 (+) True G36721
TU49448 lncRNA upstream 315790 15897181 ~ 15898165 (+) True G36705
TU49450 lncRNA upstream 328082 15882457 ~ 15885873 (+) True G36707
XR_002649884.1 lncRNA downstream 295311 16529150 ~ 16540014 (+) True LOC111192379
TU49658 lncRNA downstream 307145 16540984 ~ 16569392 (+) True G36852
TU49716 lncRNA downstream 499773 16733612 ~ 16791256 (+) False G36899
TU49715 lncRNA downstream 556831 16790670 ~ 16792600 (+) True G36899
TU49734 lncRNA downstream 602687 16836526 ~ 16837964 (+) True G36915
XM_007255127.2 mRNA upstream 38760 16149838 ~ 16175195 (+) True rhobtb1
XM_022669199.1 mRNA downstream 24321 16258160 ~ 16397388 (+) True arid5b
XM_007255119.3 mRNA downstream 174125 16407964 ~ 16527247 (+) True nrbf2
XM_007255116.3 mRNA downstream 223576 16457415 ~ 16459913 (+) True LOC103046195
XM_007255120.3 mRNA downstream 286121 16519960 ~ 16527247 (+) False nrbf2
XM_022669202.1 mRNA downstream 482052 16715891 ~ 16752203 (+) True LOC103044975
TU49230 other upstream 773802 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 1423122 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 1750316 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 3510899 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 3647984 12551780 ~ 12565971 (+) True bnip3
TU49796 other downstream 766543 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 766543 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 768601 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 967658 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 999040 17232879 ~ 17234550 (+) False cby1

Expression Profile