RNA id: TU49595


Basic Information

Item Value
RNA id TU49595
length 532
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G36800
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16213800 ~ 16214829 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtaaatgttgtaaatcgTTTTAATAAACGTTTTGGGTGACtaaaatttccaaaaaaaaaagttttgtctgTGGTggataaaatacacaaaatcaCACACGTTTAAGTGGAGATACTTAAAGTACACTCAATGTCCTGCCTTCAGAAATTCACTTAAGTACAACAGTATTTGCTTTCAAATGTACTCAAGCATAAGCACTCCTACAACTTTACAcagtacaagaaaaaaaagttaaatacagtaaccaattacatttactttatataaatgttttacactTAAATGCATGTGTTGGGTTCAGTTCAATAAAAACAATCCTGAGAAACTGCAACTCGATATTTTGTGGTCGCTGCCACCACAAACACCCTCTCCTCCTGGTCCTGGTCTTGTTAAACTCCACCTCTTtggaagaggaggaagatggaCTGTCATTTTCAGGTTCCACTTTCCCCGACCCCCATTCAATGCTCTCTTTGCAAGGCCTGGATTGGTTTCTTGCATTTAAAAGGtttcCCACAACAGCTATGGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49553 lncRNA downstream 155165 16057465 ~ 16058635 (-) True G36765
TU49543 lncRNA downstream 263101 15949775 ~ 15950699 (-) True G36755
TU49542 lncRNA downstream 349536 15863282 ~ 15864264 (-) True G36754
XR_002649905.1 lncRNA downstream 378278 15819414 ~ 15835522 (-) False LOC111192407
TU49434 lncRNA downstream 378306 15819316 ~ 15835494 (-) True LOC111192407
TU49602 lncRNA upstream 28248 16243077 ~ 16243333 (-) True G36805
TU49603 lncRNA upstream 31250 16246079 ~ 16246530 (-) True G36806
TU49604 lncRNA upstream 31711 16246540 ~ 16246771 (-) True G36807
TU49637 lncRNA upstream 190424 16405253 ~ 16405483 (-) True G36836
TU49647 lncRNA upstream 272206 16487035 ~ 16488592 (-) True G36845
XM_007255123.3 mRNA downstream 4886 16196413 ~ 16208914 (-) True LOC103021447
XM_022669187.1 mRNA downstream 187678 15874359 ~ 16026122 (-) True ank3
XM_022669186.1 mRNA downstream 362123 15841393 ~ 15851677 (-) False LOC103023209
XM_007255129.3 mRNA downstream 362123 15841393 ~ 15851677 (-) True LOC103023209
XM_007255130.3 mRNA downstream 373284 15837105 ~ 15840516 (-) True LOC103023526
XM_015607335.2 mRNA upstream 248499 16463328 ~ 16484145 (-) False egr2
XM_007255117.3 mRNA upstream 248499 16463328 ~ 16467148 (-) True egr2
XM_022669201.1 mRNA upstream 323352 16538181 ~ 16713489 (-) True jmjd1c
XM_007255111.3 mRNA upstream 575798 16790627 ~ 16793507 (-) True LOC103044660
XM_022669208.1 mRNA upstream 583688 16798517 ~ 16866094 (-) True exoc6
TU49443 other downstream 373315 15837105 ~ 15840485 (-) False LOC103023526
TU49397 other downstream 444271 15755613 ~ 15769529 (-) False G36677
TU50113 other upstream 801299 17016128 ~ 17018918 (-) True G37183
trnal-uag_1 other upstream 880416 17095245 ~ 17095326 (-) True trnal-uag_1
TU50180 other upstream 964549 17179378 ~ 17184405 (-) False LOC103030148
TU50205 other upstream 1159355 17374184 ~ 17381597 (-) True LOC103024241
TU50265 other upstream 1218143 17432972 ~ 17466024 (-) True G37290

Expression Profile