RNA id: TU49716


Basic Information

Item Value
RNA id TU49716
length 644
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G36899
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16733612 ~ 16792600 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttttattttttTTTTGCAATGTAGTcacaatgttttattaaataaagcccATACAGCAAATAGTAATTTAAATAAGTTGCATTCAGTACAAAAcactaaatgtatatataaaaacaaagctACATTACAAATATACATCACAGACACCTCAAAGAAATAAAGTGATCCATGAAAGAGTAGTGCCCTTTGTTAAAAATGGATATATACAGATCTATTATATaaaccaaaatataaaaatgtcatACGTCACATTTCATCTAATGCCTATGTACAATGCTTACGCTAGCAGCTCAAGCCGGAGTTAATGTATTAATTGCTGATGTAAGGGGTGAACTTTGTGGGAAGATTGTCCACGGGGTACACTGTTGGGCCCGTTTTCATTGTCGGAGGTCCGTTTAAAAGTGTCCAGTTGCACTGCTGCACTAGCTCGACTAAAAAGATCTTGAGCAGCACTTTGGCAAACTCTTTGCCCACACACATCCTGGAGCCTCCTCCGAAGGGGATGTAGTTAAACCTGGAACTGTCCTCCAAGCCTTTGGTCATGAATCGCTCCGGCTGAAATTCCTCTTTGTTGGGGAAGACATCTGCAACATCGTGTGTGTcacaaatgctgtaaatgacattcCATCCTTTGGGAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49658 lncRNA upstream 164220 16540984 ~ 16569392 (+) True G36852
XR_002649884.1 lncRNA upstream 193598 16529150 ~ 16540014 (+) True LOC111192379
TU49583 lncRNA upstream 518790 16213790 ~ 16214822 (+) False cabcoco1
TU49574 lncRNA upstream 521915 16211045 ~ 16211697 (+) True G36783
TU49465 lncRNA upstream 807765 15924785 ~ 15925847 (+) True G36722
TU49734 lncRNA downstream 45270 16836526 ~ 16837964 (+) True G36915
XR_002649885.1 lncRNA downstream 71814 16863070 ~ 16866954 (+) True LOC103038048
TU49807 lncRNA downstream 145756 16937012 ~ 16938031 (+) True G36959
TU49805 lncRNA downstream 229010 17020266 ~ 17020567 (+) True G36957
TU49816 lncRNA downstream 231512 17022768 ~ 17023415 (+) True G36962
XM_007255119.3 mRNA upstream 206365 16407964 ~ 16527247 (+) True nrbf2
XM_007255120.3 mRNA upstream 206365 16519960 ~ 16527247 (+) False nrbf2
XM_007255116.3 mRNA upstream 273699 16457415 ~ 16459913 (+) True LOC103046195
XM_022669199.1 mRNA upstream 336224 16258160 ~ 16397388 (+) True arid5b
XM_022669198.1 mRNA upstream 499773 16215175 ~ 16233839 (+) False cabcoco1
XM_007251304.3 mRNA downstream 138255 16929511 ~ 16943394 (+) True tubgcp2
XM_022669210.1 mRNA downstream 153808 16945064 ~ 16998115 (+) True LOC103036473
XM_022669436.1 mRNA downstream 211407 17002663 ~ 17040957 (+) True sun1
XM_007251290.3 mRNA downstream 256328 17047584 ~ 17054418 (+) True LOC103034053
XM_007251289.2 mRNA downstream 277680 17068936 ~ 17079779 (+) False LOC103033077
TU49230 other upstream 1293459 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 1942779 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 2269973 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 4030556 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 4167641 12551780 ~ 12565971 (+) True bnip3
TU49796 other downstream 209126 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 209126 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 211184 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 410241 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 441623 17232879 ~ 17234550 (+) False cby1

Expression Profile