RNA id: XM_022669417.1


Basic Information

Item Value
RNA id XM_022669417.1
length 1710
RNA type mRNA
GC content 0.60
exon number 1
gene id LOC103043629
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16913570 ~ 16915285 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCGAGCAGTCAATCGTTGCACATTGTGGGCGGGGCTTGTCTGAATGCGGGTGGAAGAAACGAAGACGATTCTCTTCGGCGCTTCCAGACAGAGAGGAGCGGCgagaacacacacttacacactttcacacacaccgAACCGGAGCCGCGCGCGACCTGCCACGATGGAGAAGAGCGCGAGGtgtgtttggtttagtttaatcCGTTCTCCTCAGTAAATTAATCCTGTTTTCTACACGTTTTAAACCAACTGCGTTTTGGCGAGTTTTTTTATCTTCACTtttctaacatttaaaaaaacgtgTATTTCATCGTTTTTAACATCGAATGGaaaggtgtattttttatttttaaatccattttttgtggtttgtttgtttttggagtTTGAATTAATGAAACGAGGCTGAAAGGATGAGGACATGAATTTTTCAAGCCTCTTCGCCACATCGGGACCCCCAGGTCTCTCCAACTCGTCCCTCCGGACCCCCAGCAGCCACAACAGCAGCGCGTCTGTTCCTGCTCACCCTCCTTTACCTCCCCCTccgcttcctcctcctcctcaccctCACCTCCCCCCTATGGACGTGCTGTTCTCCGGGCGCGAGCCTGGCACGGTTCTCCTGGCGCTGATGTACGTGGCCTCGTTCCTGACGGGTCTGGCGGGGAACGTGACGGCTCTGCTTGCGCTGGGTGGCGGGAGGAAGGGCAGCAGGATGAAGGTGCTGAGGATGAGGAGCGCGTCCTCCGCCACGCGGCGCCTGCTGGCCAACCTGGCAGCGTGCGACACCCTGGTGGTGTGCGTGTGCATGCCGGCCAATCTGGGCCACCACGTGCACCGCGCGTGGCCGTTCGGGGAGCCGCTGTGTCGCGCGGTGCCCTTCGTGCAGGCGGTGTCGGTGTCGGCCAGCGTGCTCAGTCTGGCCGCGCTGGGACTCAGCCGCTACTGCGGCGTCCACAGCCCGTTGCGCGCGCGCCACGCCTTCACGGGGGCGCGCGTGGGCGTCGTGATCGCCGCCGTGTGGGCCGTGTCGTCGGGACTGTGCCTGCCGCTGCTCTTTACCAACGAGACGCGCACGCTCGAGCTCCCGGACGGCGCGCGCTCCGTGACGCTGTGCGTGGAGAGCTGGTCGGAGGCGCGCCTGCGCCAGGGCTACAACTTCCTTCTGTTCTGCGCGCTCTACGCCTTCCCCGTGCTCTTCAACCTGGTCATCTGCTCGCTCACCGTGCGCAAACTCTGGGGGGCAAAGCACGAGGCCGCCGAGTTCGGATTCACCCGCTCGGGTTCGCGCCTGGAAACGCGCAAGAGGATCGCCAAGATGGTGCTGGTGCTCGTGTTGCTCTTCACCTTCTCGTGGCTGCCGCTGTACGTGGTGGACATCTGGCTGGACTTCCACATGCCCGCGGACCGGGGGGGCGTGCCGGAGCGCGTGGAGCACGAGTGGGTGCTGCAGGGCCGGCCGTTCGCGCAGTGGCTCGGACTCACCAACTCTGCGCTGAACCCGCTCTGCTACTGCTTCGTGGGCGAGCTGAGGCGATCCGCGCGCAGACTGGCCGCCAGCTACAGGCTGAGGGTCTCCGGACTATTCAGGAAGACCAAGGACTCAAAGAGCAGCAAGGCGcccgagagggagtgtgtgtgagcgcgCGTTACTGGTTAAAATGGGAGTTCCACCAATTTAACATCGACCATTTCATTAAGATCAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49748 lncRNA downstream 161408 16742832 ~ 16752168 (-) True G36922
TU49694 lncRNA downstream 269011 16638592 ~ 16644565 (-) True G36882
TU49647 lncRNA downstream 424984 16487035 ~ 16488592 (-) True G36845
TU49637 lncRNA downstream 508093 16405253 ~ 16405483 (-) True G36836
TU49604 lncRNA downstream 666805 16246540 ~ 16246771 (-) True G36807
TU50115 lncRNA upstream 85087 17000372 ~ 17015898 (-) True G37185
TU50119 lncRNA upstream 105436 17020721 ~ 17020928 (-) True G37189
TU50116 lncRNA upstream 111172 17026457 ~ 17026942 (-) True G37186
TU50121 lncRNA upstream 121271 17036556 ~ 17040941 (-) True G37191
TU50126 lncRNA upstream 132322 17047607 ~ 17054418 (-) False crym
XM_007251305.3 mRNA downstream 20059 16875022 ~ 16893517 (-) True LOC103037732
XM_022669208.1 mRNA downstream 47482 16798517 ~ 16866094 (-) True exoc6
XM_022669209.1 mRNA downstream 47487 16816228 ~ 16866089 (-) False exoc6
XM_022669207.1 mRNA downstream 50175 16798517 ~ 16863401 (-) False exoc6
XM_022669206.1 mRNA downstream 50175 16798517 ~ 16863401 (-) False exoc6
XM_015606335.2 mRNA upstream 138244 17053529 ~ 17062947 (-) False crym
XM_007251291.3 mRNA upstream 138244 17053529 ~ 17062945 (-) True crym
XM_007251285.3 mRNA upstream 150118 17065403 ~ 17067982 (-) True LOC103032763
XM_007251319.2 mRNA upstream 233256 17148541 ~ 17169878 (-) True LOC103043322
XM_007251275.3 mRNA upstream 264062 17179347 ~ 17184427 (-) True LOC103030148
TU49443 other downstream 1073091 15837105 ~ 15840485 (-) False LOC103023526
TU49397 other downstream 1144047 15755613 ~ 15769529 (-) False G36677
TU50113 other upstream 100843 17016128 ~ 17018918 (-) True G37183
trnal-uag_1 other upstream 179960 17095245 ~ 17095326 (-) True trnal-uag_1
TU50180 other upstream 264093 17179378 ~ 17184405 (-) False LOC103030148
TU50205 other upstream 458899 17374184 ~ 17381597 (-) True LOC103024241
TU50265 other upstream 517687 17432972 ~ 17466024 (-) True G37290

Expression Profile