RNA id: TU49865


Basic Information

Item Value
RNA id TU49865
length 476
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G36998
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17222400 ~ 17222875 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagcaagtaccgtattactccgcgacgctcctgacaacggtagccgtaacgctccgacagaccataatattactatgttgaagcacagcaagtaccgtattactccgcgacgctcctgacaacggtagccgcaacgctccgacagaccataatattatgttgaagcacagcaagtacgtattactccgcgacgctcctgacaacggtagccgcaacgctccgacagaccataatattatgttgaagcacagcaagtaccgcattactccgcgaggcttctgactataatagcgtgttgtgccgaattcggtgaataaaacggttttaaaacagagataaagattggataagtttcatttctggatgaagtgatttccagcgctgtttggatataactgtggattacaggagactggattgatggattctctttagtctggacgcgttttgaaggtaggacctgtggctgagcgcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49840 lncRNA upstream 49775 17172425 ~ 17172625 (+) True G36983
TU49839 lncRNA upstream 52544 17169351 ~ 17169856 (+) True G36982
TU49838 lncRNA upstream 55250 17166909 ~ 17167150 (+) True G36981
TU49833 lncRNA upstream 56997 17155946 ~ 17165403 (+) True G36977
TU49823 lncRNA upstream 164398 17057504 ~ 17058002 (+) True G36969
TU49867 lncRNA downstream 460 17223335 ~ 17223700 (+) True G37000
TU49868 lncRNA downstream 1166 17224041 ~ 17224407 (+) True G37001
TU49887 lncRNA downstream 50486 17273361 ~ 17276021 (+) False LOC103027613
TU49896 lncRNA downstream 74604 17297479 ~ 17340881 (+) False tnrc6b
TU49957 lncRNA downstream 245082 17467957 ~ 17468321 (+) True G37055
XM_007251273.3 mRNA upstream 18137 17201498 ~ 17204263 (+) False phf5a
XM_007251278.3 mRNA upstream 73052 17132606 ~ 17149348 (+) False LOC103030465
XM_007251276.3 mRNA upstream 73052 17132607 ~ 17149348 (+) True LOC103030465
XM_007251277.3 mRNA upstream 73052 17132611 ~ 17149348 (+) False LOC103030465
XM_007251283.3 mRNA upstream 90687 17123605 ~ 17131713 (+) True LOC103032149
XM_015606315.2 mRNA downstream 9945 17232820 ~ 17234559 (+) True cby1
XM_015606314.2 mRNA downstream 14549 17237424 ~ 17240632 (+) True slc16a8
XM_007251267.3 mRNA downstream 18819 17241694 ~ 17247513 (+) True LOC103027934
XM_007251266.3 mRNA downstream 28106 17250981 ~ 17273867 (+) True LOC103027613
XM_022669217.1 mRNA downstream 103701 17326576 ~ 17340892 (+) False tnrc6b
TU49795 other upstream 17367 17201497 ~ 17205033 (+) True phf5a
TU49796 other upstream 203516 17000382 ~ 17018884 (+) False sun1
TU49797 other upstream 203516 17000382 ~ 17018884 (+) False sun1
TU49799 other upstream 203516 17002440 ~ 17018884 (+) False sun1
TU49230 other upstream 1782247 15432831 ~ 15440153 (+) False LOC103028998
TU49869 other downstream 10004 17232879 ~ 17234550 (+) False cby1
TU49885 other downstream 56786 17279661 ~ 17282231 (+) False LOC103027613
TU49999 other downstream 482831 17705706 ~ 17708597 (+) False LOC103045739
TU50007 other downstream 492254 17715129 ~ 17715992 (+) True G37098
TU50008 other downstream 495356 17718231 ~ 17719376 (+) True G37099

Expression Profile