RNA id: TU49887


Basic Information

Item Value
RNA id TU49887
length 2583
lncRNA type sense_over
GC content 0.38
exon number 2
gene id LOC103027613
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17250981 ~ 17282231 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgatttcagtcattttttactgttgtctttatttttttattagaaacagttgATATTTTTATAAGAATACATTAGGTCTGTGTGTAGTTCCTGTGCAAAAAGAGCACATtcgtgtatatacagtatagatgACATCATCGAGAAGTCAACTCCTCtgtcatagtaaaaaaaattaaatttatataaacatCATATAAGCTGTTATAATCTAAAACTTTGGTGTGTCAAACAAATATTGTATAAAGACTTCCTTATGACAAAACTTGAgtgttttatgattttgttgGTTATTTGTGGACGCAAATATTTATTGCCTAATAAACTAAATGAGAAACAGAATTTCCAGAaccataaaaaatatgttttttgccCTGTTGATTTGCCCAGAAATCACAGCTCACAgcataatttgattaataaaactgcTTTCCCATTATATTTGTTTGGAATAAGGCTTAATCAAAGTTTACATGAAGcataatacatgtgtaataaacCATTCAAATGCACCAAGAGTACTGGCGCAAAAATTAAGAGTATACCATAAGTTCTGGAATAGTTCATATTGTTTaggttatttttaaacataccttttgaaaagaaaaacaatgcagtttggtttaataaattgtgctaaatgctaaaaaaaaaaacagaactataAGAAGCTTAGctcttaaaaagaaagaaaaaaataatgtatatatatataacctggCACATAAAAGTGTATAGAATGTATCTCTGGCAGGAGGCACTCATGTCTGGCTTTGGGATCTGGCTATTGAATATAACTAATGTTTAtaattaggagaaaaaaaagactttctatCACTTACTCAATCACTTCAACAAGTATTATCATACAACATGtccaaactaaaaataaaaaagattcatCATATTCTTCAACATCTATTCTACATTCTTTCAACTCTCATTGTTCCCTTTAAAGCACCATCCACACCTGACTCAATGACTCCATACATGCCTCAtttaaaatgaaaaatgttgtaTTGTATCATGGCTGTGGATAAAACTAGGATTGTATCAATCTGATAATAGCATCAGCATTGTCGTAATGATGTCCAGAATTACTGAATCGAATATCGGAGGAAAAACATAGTCATTTTAATCCTATAACCCAACCCTACACGTGTTTAAGTCTGCTTGCCAGTATTCTAGACTTAATAAGGAAGTAGAATATTTTGTTCACAGCTTGAGCACAGGCAAAGTGCATTCAGACAAATACGTTGTTAACAGCTTAGTTGAAGAGAAAAACCAAGCTGTTGATTTGATATCAGCATCAGCCGACACTCAAGGTTGCAGTATCAGAATCTAACATTAGGAAGTCTACAGTAAATTTGTCAGTGGTAAATGCTAAATTTAACCCATTTCCTTCCCAATTTGGAAAGCCAAATCCTCATTAATATAAACTTCCTCTATTATTACTAATGTCCCTAACACTATGAGGGTAAAGattaacacatgcctcctccaaaacatgtgaagtcaaccaccaCTTATTTTCCAACTGCTGCCAATTCAGCATCACTGGGAGCTAAACcaacactctcagtgttaaattaacacttcaAGTGTTACAACTTCAACTGTGTGGTGTGATGCCTCCCTTAGACAAAACACTAAGCCACTGCCTGACTCTTTAAATTCAATAATATCCACAGCCATGATAAAACagtctttttccttttctgtcAAATCCTAGGGTcctcctttttattatttattttattttttattttgaagagagtgccatgaaaatgtattttgcattttaaacacattcacACTGAAAAGACACTCGGTATCCATATTAAGTTTTGTAATCCTTTTAAATCCTTAAAATATCTTAATGTCTTAATACCatgaaattaaatcatttaaaaatatttttgataatCTCAAGAGCATCCTTTCTTTAGGCTAGACTTTGATCTCTTCCTCTTCATCCAGGTAAGTGTAATTCCCTCTCTTTTGAGAGCAGCTAATGTCAATGTTCTTGCGAGTCCCGCTGCCGTAGTGACGTGCCAGCACATCTGCAGCCTTCTGAAATCTCTCAGCCTCCATGCCGTGTTCTCCTGCAGTGTAAGATTGCACCAGGTCACCAGGCACACCTGTAGGCCTTTTCGGGGTTTCTCTGTTCATCACGTCCCCACGCCCCCACTCTACACCATACAAGCGGCTCCGGCCCTCAGAATCCTCCCTCAAAAGGGAATCCACCAGTGACGTTTTAGCATCCAGGTCAATTCCAGCTTTGCCATTGGACAACCCAAACAGAGCCTTGGGCTCGTGCTCAACCTCAGAGACTTCAGTGACTTCCTGTTGGTCAGTGGGGCTGTCAATCATGCCAAAAACCTCAGACATGAGGGAGGGACCGAGATCCACAGTGAAGGAGGAGATGGAGTCACAGCGGCCGAGGGTATCTGGGCAGGAGAAGGACGGGATGGCGTTGTTGTCAGTGATGGAGCCACGGTGGATCTGGGCAGAACAGCCAGTGGGGGAGCTGCCCTGCGGTGAACGTTCAGTGCGGGACAACCGGGGCAGCGTGACAAAACCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49868 lncRNA upstream 48954 17224041 ~ 17224407 (+) True G37001
TU49867 lncRNA upstream 49661 17223335 ~ 17223700 (+) True G37000
TU49865 lncRNA upstream 50486 17222400 ~ 17222875 (+) True G36998
TU49840 lncRNA upstream 100736 17172425 ~ 17172625 (+) True G36983
TU49839 lncRNA upstream 103505 17169351 ~ 17169856 (+) True G36982
TU49896 lncRNA downstream 21458 17297479 ~ 17340881 (+) False tnrc6b
TU49957 lncRNA downstream 191936 17467957 ~ 17468321 (+) True G37055
TU49958 lncRNA downstream 192459 17468480 ~ 17468772 (+) True G37056
TU49960 lncRNA downstream 194303 17470324 ~ 17470774 (+) True G37058
TU49962 lncRNA downstream 199397 17475418 ~ 17475771 (+) True G37060
XM_007251267.3 mRNA upstream 25848 17241694 ~ 17247513 (+) True LOC103027934
XM_015606314.2 mRNA upstream 32729 17237424 ~ 17240632 (+) True slc16a8
XM_015606315.2 mRNA upstream 38802 17232820 ~ 17234559 (+) True cby1
XM_007251273.3 mRNA upstream 69098 17201498 ~ 17204263 (+) False phf5a
XM_007251278.3 mRNA upstream 124013 17132606 ~ 17149348 (+) False LOC103030465
XM_022669217.1 mRNA downstream 50555 17326576 ~ 17340892 (+) False tnrc6b
XM_022669219.1 mRNA downstream 50555 17326576 ~ 17340892 (+) False tnrc6b
XM_022669215.1 mRNA downstream 50556 17326577 ~ 17340892 (+) True tnrc6b
XM_022669216.1 mRNA downstream 50556 17326577 ~ 17340892 (+) False tnrc6b
XM_022669220.1 mRNA downstream 50557 17326578 ~ 17340892 (+) False tnrc6b
TU49869 other upstream 38811 17232879 ~ 17234550 (+) False cby1
TU49795 other upstream 68328 17201497 ~ 17205033 (+) True phf5a
TU49796 other upstream 254477 17000382 ~ 17018884 (+) False sun1
TU49797 other upstream 254477 17000382 ~ 17018884 (+) False sun1
TU49799 other upstream 254477 17002440 ~ 17018884 (+) False sun1
TU49885 other downstream 3640 17279661 ~ 17282231 (+) False LOC103027613
TU49999 other downstream 429685 17705706 ~ 17708597 (+) False LOC103045739
TU50007 other downstream 439108 17715129 ~ 17715992 (+) True G37098
TU50008 other downstream 442210 17718231 ~ 17719376 (+) True G37099
TU50046 other downstream 581896 17857917 ~ 17863066 (+) True G37131

Expression Profile